RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 SATB1Q01826 763 aa25.81■■□□□ 1.72
LSM4-202ENST00000593564 RSPO4Q2I0M5 234 aaPredicted RBP25.81■■□□□ 1.72
LSM4-202ENST00000593564 SV2CQ496J9 727 aa25.81■■□□□ 1.72
LSM4-202ENST00000593564 DNAJC19Q96DA6 116 aa25.81■■□□□ 1.72
LSM4-202ENST00000593564 ZFYVE19Q96K21 471 aa25.81■■□□□ 1.72
LSM4-202ENST00000593564 ZNF560Q96MR9 790 aa25.81■■□□□ 1.72
LSM4-202ENST00000593564 GCNAQ96QF7 691 aa25.81■■□□□ 1.72
LSM4-202ENST00000593564 NUP210Q8TEM1 1887 aaPredicted RBP25.81■■□□□ 1.72
LSM4-202ENST00000593564 HAPLN1P10915 354 aaPredicted RBP25.8■■□□□ 1.72
LSM4-202ENST00000593564 TXLNAP40222 546 aa25.8■■□□□ 1.72
LSM4-202ENST00000593564 PNPLA4P41247 253 aa25.8■■□□□ 1.72
LSM4-202ENST00000593564 CYP4F8P98187 520 aa25.8■■□□□ 1.72
LSM4-202ENST00000593564 PLCB2Q00722 1185 aa25.8■■□□□ 1.72
LSM4-202ENST00000593564 KCNA1Q09470 495 aa25.8■■□□□ 1.72
LSM4-202ENST00000593564 L1TD1Q5T7N2 865 aaKnown RBP25.8■■□□□ 1.72
LSM4-202ENST00000593564 RRAGBQ5VZM2 374 aa25.8■■□□□ 1.72
LSM4-202ENST00000593564 TXNDC11Q6PKC3 985 aa25.8■■□□□ 1.72
LSM4-202ENST00000593564 SV2BQ7L1I2 683 aa25.8■■□□□ 1.72
LSM4-202ENST00000593564 DCP1BQ8IZD4 617 aaKnown RBP25.8■■□□□ 1.72
LSM4-202ENST00000593564 CELF5Q8N6W0 485 aaKnown RBP25.8■■□□□ 1.72
LSM4-202ENST00000593564 BPIFB1Q8TDL5 484 aa25.8■■□□□ 1.72
LSM4-202ENST00000593564 ACCSQ96QU6 501 aa25.8■■□□□ 1.72
LSM4-202ENST00000593564 GTSE1Q9NYZ3 720 aa25.8■■□□□ 1.72
LSM4-202ENST00000593564 ZMYM5Q9UJ78 669 aa25.8■■□□□ 1.72
LSM4-202ENST00000593564 GMEB2Q9UKD1 530 aa25.8■■□□□ 1.72
LSM4-202ENST00000593564 NCOR2Q9Y618 2525 aa25.8■■□□□ 1.72
LSM4-202ENST00000593564 MED19A0JLT2 244 aaPredicted RBP25.79■■□□□ 1.72
LSM4-202ENST00000593564 PAPSS2O95340 614 aaPredicted RBP25.79■■□□□ 1.72
LSM4-202ENST00000593564 CDR1P51861 262 aa25.79■■□□□ 1.72
LSM4-202ENST00000593564 TAF12Q16514 161 aa25.79■■□□□ 1.72
LSM4-202ENST00000593564 WDR44Q5JSH3 913 aa25.79■■□□□ 1.72
LSM4-202ENST00000593564 DGKKQ5KSL6 1271 aa25.79■■□□□ 1.72
LSM4-202ENST00000593564 GIPC2Q8TF65 315 aa25.79■■□□□ 1.72
LSM4-202ENST00000593564 CLIC6Q96NY7 704 aa25.79■■□□□ 1.72
LSM4-202ENST00000593564 FAM213AQ9BRX8 229 aa25.79■■□□□ 1.72
LSM4-202ENST00000593564 RBM12Q9NTZ6 932 aaKnown RBP25.79■■□□□ 1.72
LSM4-202ENST00000593564 ABI2Q9NYB9 513 aaPredicted RBP25.79■■□□□ 1.72
LSM4-202ENST00000593564 RAB23Q9ULC3 237 aa25.79■■□□□ 1.72
LSM4-202ENST00000593564 SDHBP21912 280 aa25.78■■□□□ 1.72
LSM4-202ENST00000593564 TGM1P22735 817 aa25.78■■□□□ 1.72
LSM4-202ENST00000593564 LMNB2Q03252 620 aa25.78■■□□□ 1.72
LSM4-202ENST00000593564 RESTQ13127 1097 aa25.78■■□□□ 1.72
LSM4-202ENST00000593564 BRSK2Q8IWQ3 736 aa25.78■■□□□ 1.72
LSM4-202ENST00000593564 SLC46A2Q9BY10 475 aa25.78■■□□□ 1.72
LSM4-202ENST00000593564 OLFML3Q9NRN5 406 aa25.78■■□□□ 1.72
LSM4-202ENST00000593564 TBC1D7Q9P0N9 293 aa25.78■■□□□ 1.72
LSM4-202ENST00000593564 PCDHB5Q9Y5E4 795 aa25.78■■□□□ 1.72
LSM4-202ENST00000593564 GCNT3O95395 438 aa25.77■■□□□ 1.72
LSM4-202ENST00000593564 WNT7BP56706 349 aa25.77■■□□□ 1.72
LSM4-202ENST00000593564 LAIR1Q6GTX8 287 aa25.77■■□□□ 1.72
LSM4-202ENST00000593564 Q6ZS52 159 aa25.77■■□□□ 1.72
LSM4-202ENST00000593564 TTC8Q8TAM2 541 aa25.77■■□□□ 1.72
LSM4-202ENST00000593564 THG1LQ9NWX6 298 aaKnown RBP25.77■■□□□ 1.72
LSM4-202ENST00000593564 PCDHB13Q9Y5F0 798 aa25.77■■□□□ 1.72
LSM4-202ENST00000593564 MORC2Q9Y6X9 1032 aaPredicted RBP25.77■■□□□ 1.72
LSM4-202ENST00000593564 FRMD3A2A2Y4 597 aa25.76■■□□□ 1.71
LSM4-202ENST00000593564 PRR5-ARHGAP8B1AHC4 643 aa25.76■■□□□ 1.71
LSM4-202ENST00000593564 LDHAP00338 332 aaKnown RBP25.76■■□□□ 1.71
LSM4-202ENST00000593564 GARTP22102 1010 aa25.76■■□□□ 1.71
LSM4-202ENST00000593564 POLR2BP30876 1174 aaKnown RBP25.76■■□□□ 1.71
LSM4-202ENST00000593564 ARHGAP8P85298 464 aa25.76■■□□□ 1.71
LSM4-202ENST00000593564 TFAMQ00059 246 aaKnown RBP25.76■■□□□ 1.71
LSM4-202ENST00000593564 TSPY1Q01534 308 aa25.76■■□□□ 1.71
LSM4-202ENST00000593564 TNK2Q07912 1038 aa25.76■■□□□ 1.71
LSM4-202ENST00000593564 ALCAMQ13740 583 aa25.76■■□□□ 1.71
LSM4-202ENST00000593564 CCINQ13939 588 aa25.76■■□□□ 1.71
LSM4-202ENST00000593564 PON2Q15165 354 aa25.76■■□□□ 1.71
LSM4-202ENST00000593564 NFE2Q16621 373 aaPredicted RBP25.76■■□□□ 1.71
LSM4-202ENST00000593564 CCDC73Q6ZRK6 1079 aa25.76■■□□□ 1.71
LSM4-202ENST00000593564 CMTM8Q8IZV2 173 aa25.76■■□□□ 1.71
LSM4-202ENST00000593564 SYNPOQ8N3V7 929 aa25.76■■□□□ 1.71
LSM4-202ENST00000593564 PDCL2Q8N4E4 241 aa25.76■■□□□ 1.71
LSM4-202ENST00000593564 C1orf127Q8N9H9 656 aa25.76■■□□□ 1.71
LSM4-202ENST00000593564 ZSWIM2Q8NEG5 633 aa25.76■■□□□ 1.71
LSM4-202ENST00000593564 SAAL1Q96ER3 474 aa25.76■■□□□ 1.71
LSM4-202ENST00000593564 TMLHEQ9NVH6 421 aa25.76■■□□□ 1.71
LSM4-202ENST00000593564 USP18Q9UMW8 372 aa25.76■■□□□ 1.71
LSM4-202ENST00000593564 K7ESF4 209 aa25.75■■□□□ 1.71
LSM4-202ENST00000593564 HMGA1P17096 107 aaKnown RBP25.75■■□□□ 1.71
LSM4-202ENST00000593564 SYT1P21579 422 aa25.75■■□□□ 1.71
LSM4-202ENST00000593564 DDX6P26196 483 aaKnown RBP eCLIP25.75■■□□□ 1.71
LSM4-202ENST00000593564 CASP5P51878 434 aa25.75■■□□□ 1.71
LSM4-202ENST00000593564 NLRP12P59046 1061 aa25.75■■□□□ 1.71
LSM4-202ENST00000593564 ITPRIPL2Q3MIP1 535 aa25.75■■□□□ 1.71
LSM4-202ENST00000593564 FAM173BQ6P4H8 233 aa25.75■■□□□ 1.71
LSM4-202ENST00000593564 TMEM150AQ86TG1 271 aa25.75■■□□□ 1.71
LSM4-202ENST00000593564 CACTINQ8WUQ7 758 aaKnown RBP25.75■■□□□ 1.71
LSM4-202ENST00000593564 LEO1Q8WVC0 666 aaPredicted RBP25.75■■□□□ 1.71
LSM4-202ENST00000593564 SMG9Q9H0W8 520 aaKnown RBP25.75■■□□□ 1.71
LSM4-202ENST00000593564 PARD6AQ9NPB6 346 aa25.75■■□□□ 1.71
LSM4-202ENST00000593564 RBAKQ9NYW8 714 aaPredicted RBP25.75■■□□□ 1.71
LSM4-202ENST00000593564 L1RE1Q9UN81 338 aa25.75■■□□□ 1.71
LSM4-202ENST00000593564 AGAP1Q9UPQ3 857 aa25.75■■□□□ 1.71
LSM4-202ENST00000593564 TCHHQ07283 1943 aa25.75■■□□□ 1.71
LSM4-202ENST00000593564 F11P03951 625 aa25.74■■□□□ 1.71
LSM4-202ENST00000593564 ITGB3P05106 788 aa25.74■■□□□ 1.71
LSM4-202ENST00000593564 IDEP14735 1019 aa25.74■■□□□ 1.71
LSM4-202ENST00000593564 CNR2P34972 360 aa25.74■■□□□ 1.71
LSM4-202ENST00000593564 CEBPZQ03701 1054 aaKnown RBP25.74■■□□□ 1.71
LSM4-202ENST00000593564 DMWDQ09019 674 aa25.74■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms