RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.28□□□□□ -1.72
VPS4B-203ENST00000588323 PCDHB1Q9Y5F3 818 aa4.28□□□□□ -1.72
VPS4B-203ENST00000588323 F2RL2O00254 374 aa4.27□□□□□ -1.73
VPS4B-203ENST00000588323 MT-CO1P00395 513 aa4.27□□□□□ -1.73
VPS4B-203ENST00000588323 CYP2D6P10635 497 aa4.27□□□□□ -1.73
VPS4B-203ENST00000588323 HOXB6P17509 224 aaKnown RBP4.27□□□□□ -1.73
VPS4B-203ENST00000588323 CHRM3P20309 590 aa4.27□□□□□ -1.73
VPS4B-203ENST00000588323 MALP21145 153 aa4.27□□□□□ -1.73
VPS4B-203ENST00000588323 SMARCA1P28370 1054 aa4.27□□□□□ -1.73
VPS4B-203ENST00000588323 ZNF135P52742 658 aaPredicted RBP4.27□□□□□ -1.73
VPS4B-203ENST00000588323 KIF23Q02241 960 aaPredicted RBP4.27□□□□□ -1.73
VPS4B-203ENST00000588323 INAVAQ3KP66 663 aa4.27□□□□□ -1.73
VPS4B-203ENST00000588323 KHDC1Q4VXA5 237 aaKnown RBP4.27□□□□□ -1.73
VPS4B-203ENST00000588323 SLC4A10Q6U841 1118 aa4.27□□□□□ -1.73
VPS4B-203ENST00000588323 TTC7BQ86TV6 843 aa4.27□□□□□ -1.73
VPS4B-203ENST00000588323 FANCBQ8NB91 859 aa4.27□□□□□ -1.73
VPS4B-203ENST00000588323 KLHDC4Q8TBB5 520 aa4.27□□□□□ -1.73
VPS4B-203ENST00000588323 NSUN6Q8TEA1 469 aaKnown RBP4.27□□□□□ -1.73
VPS4B-203ENST00000588323 TBC1D5Q92609 795 aa4.27□□□□□ -1.73
VPS4B-203ENST00000588323 FAXDC2Q96IV6 333 aa4.27□□□□□ -1.73
VPS4B-203ENST00000588323 ZNF48Q96MX3 618 aaPredicted RBP4.27□□□□□ -1.73
VPS4B-203ENST00000588323 DMRTA2Q96SC8 542 aa4.27□□□□□ -1.73
VPS4B-203ENST00000588323 VRK1Q99986 396 aaPredicted RBP4.27□□□□□ -1.73
VPS4B-203ENST00000588323 KRTAP1-5Q9BYS1 174 aa4.27□□□□□ -1.73
VPS4B-203ENST00000588323 SIK2Q9H0K1 926 aa4.27□□□□□ -1.73
VPS4B-203ENST00000588323 CFAP20Q9Y6A4 193 aaKnown RBP4.27□□□□□ -1.73
VPS4B-203ENST00000588323 SMIM22K7EJ46 135 aa4.26□□□□□ -1.73
VPS4B-203ENST00000588323 PPP6CO00743 305 aa4.26□□□□□ -1.73
VPS4B-203ENST00000588323 VPS4BO75351 444 aa4.26□□□□□ -1.73
VPS4B-203ENST00000588323 MOSPD3O75425 235 aa4.26□□□□□ -1.73
VPS4B-203ENST00000588323 PCSK6P29122 969 aa4.26□□□□□ -1.73
VPS4B-203ENST00000588323 ALDH9A1P49189 494 aa4.26□□□□□ -1.73
VPS4B-203ENST00000588323 CCT4P50991 539 aaKnown RBP4.26□□□□□ -1.73
VPS4B-203ENST00000588323 SNAPC2Q13487 334 aa4.26□□□□□ -1.73
VPS4B-203ENST00000588323 HABP2Q14520 560 aaPredicted RBP4.26□□□□□ -1.73
VPS4B-203ENST00000588323 ZNF618Q5T7W0 954 aa4.26□□□□□ -1.73
VPS4B-203ENST00000588323 PRAMEF17Q5VTA0 474 aa4.26□□□□□ -1.73
VPS4B-203ENST00000588323 SLC18B1Q6NT16 456 aa4.26□□□□□ -1.73
VPS4B-203ENST00000588323 ANKRD16Q6P6B7 361 aa4.26□□□□□ -1.73
VPS4B-203ENST00000588323 ZNF804AQ7Z570 1209 aa4.26□□□□□ -1.73
VPS4B-203ENST00000588323 CBARPQ8N350 705 aaPredicted RBP4.26□□□□□ -1.73
VPS4B-203ENST00000588323 COA7Q96BR5 231 aa4.26□□□□□ -1.73
VPS4B-203ENST00000588323 REPS1Q96D71 796 aa4.26□□□□□ -1.73
VPS4B-203ENST00000588323 QTRT1Q9BXR0 403 aaKnown RBP4.26□□□□□ -1.73
VPS4B-203ENST00000588323 FAM126AQ9BYI3 521 aaPredicted RBP4.26□□□□□ -1.73
VPS4B-203ENST00000588323 GPR35Q9HC97 309 aa4.26□□□□□ -1.73
VPS4B-203ENST00000588323 SLAMF7Q9NQ25 335 aa4.26□□□□□ -1.73
VPS4B-203ENST00000588323 MRFAP1Q9Y605 127 aa4.26□□□□□ -1.73
VPS4B-203ENST00000588323 RAD54BQ9Y620 910 aa4.26□□□□□ -1.73
VPS4B-203ENST00000588323 QSOX1O00391 747 aa4.25□□□□□ -1.73
VPS4B-203ENST00000588323 KCNAB3O43448 404 aa4.25□□□□□ -1.73
VPS4B-203ENST00000588323 MYBL2P10244 700 aa4.25□□□□□ -1.73
VPS4B-203ENST00000588323 JUPP14923 745 aa4.25□□□□□ -1.73
VPS4B-203ENST00000588323 POU3F3P20264 500 aaPredicted RBP4.25□□□□□ -1.73
VPS4B-203ENST00000588323 UAP1L1Q3KQV9 507 aa4.25□□□□□ -1.73
VPS4B-203ENST00000588323 SUPT20HL1Q3ZLR7 823 aa4.25□□□□□ -1.73
VPS4B-203ENST00000588323 AARS2Q5JTZ9 985 aaKnown RBP4.25□□□□□ -1.73
VPS4B-203ENST00000588323 VPS53Q5VIR6 699 aa4.25□□□□□ -1.73
VPS4B-203ENST00000588323 NECAB2Q7Z6G3 386 aa4.25□□□□□ -1.73
VPS4B-203ENST00000588323 SH2D3AQ9BRG2 576 aa4.25□□□□□ -1.73
VPS4B-203ENST00000588323 MRPS18AQ9NVS2 196 aaKnown RBP4.25□□□□□ -1.73
VPS4B-203ENST00000588323 PRKAB1Q9Y478 270 aa4.25□□□□□ -1.73
VPS4B-203ENST00000588323 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.24□□□□□ -1.73
VPS4B-203ENST00000588323 TISP43B9A030 160 aa4.24□□□□□ -1.73
VPS4B-203ENST00000588323 NT5C1B-RDH14C9J2C7 533 aa4.24□□□□□ -1.73
VPS4B-203ENST00000588323 PPM1DO15297 605 aa4.24□□□□□ -1.73
VPS4B-203ENST00000588323 PCDHGA12O60330 932 aa4.24□□□□□ -1.73
VPS4B-203ENST00000588323 KIF20AO95235 890 aa4.24□□□□□ -1.73
VPS4B-203ENST00000588323 RARBP10826 455 aa4.24□□□□□ -1.73
VPS4B-203ENST00000588323 MMP13P45452 471 aa4.24□□□□□ -1.73
VPS4B-203ENST00000588323 PHKA1P46020 1223 aa4.24□□□□□ -1.73
VPS4B-203ENST00000588323 GCLCP48506 637 aaPredicted RBP4.24□□□□□ -1.73
VPS4B-203ENST00000588323 PIK3CGP48736 1102 aa4.24□□□□□ -1.73
VPS4B-203ENST00000588323 EEFSECP57772 596 aaKnown RBP4.24□□□□□ -1.73
VPS4B-203ENST00000588323 ABCB5Q2M3G0 1257 aa4.24□□□□□ -1.73
VPS4B-203ENST00000588323 CEP78Q5JTW2 689 aa4.24□□□□□ -1.73
VPS4B-203ENST00000588323 FAM109AQ8N4B1 249 aa4.24□□□□□ -1.73
VPS4B-203ENST00000588323 TEKT5Q96M29 485 aa4.24□□□□□ -1.73
VPS4B-203ENST00000588323 TMX1Q9H3N1 280 aa4.24□□□□□ -1.73
VPS4B-203ENST00000588323 AGAP1Q9UPQ3 857 aa4.24□□□□□ -1.73
VPS4B-203ENST00000588323 PCDHGA9Q9Y5G4 932 aaKnown RBP4.24□□□□□ -1.73
VPS4B-203ENST00000588323 PCDHGA8Q9Y5G5 932 aa4.24□□□□□ -1.73
VPS4B-203ENST00000588323 PCDHGA7Q9Y5G6 932 aa4.24□□□□□ -1.73
VPS4B-203ENST00000588323 PCDHGA6Q9Y5G7 932 aa4.24□□□□□ -1.73
VPS4B-203ENST00000588323 PCDHGA3Q9Y5H0 932 aa4.24□□□□□ -1.73
VPS4B-203ENST00000588323 PRRT4C9JH25 899 aa4.23□□□□□ -1.73
VPS4B-203ENST00000588323 H0YIZ8 118 aa4.23□□□□□ -1.73
VPS4B-203ENST00000588323 TRIM38O00635 465 aa4.23□□□□□ -1.73
VPS4B-203ENST00000588323 ZNF213O14771 459 aa4.23□□□□□ -1.73
VPS4B-203ENST00000588323 TUBB4AP04350 444 aa4.23□□□□□ -1.73
VPS4B-203ENST00000588323 PDHA1P08559 390 aa4.23□□□□□ -1.73
VPS4B-203ENST00000588323 FTH1P19P0C7X4 201 aa4.23□□□□□ -1.73
VPS4B-203ENST00000588323 NHLRC4P0CG21 123 aaPredicted RBP4.23□□□□□ -1.73
VPS4B-203ENST00000588323 CYP2C18P33260 490 aa4.23□□□□□ -1.73
VPS4B-203ENST00000588323 KIF22Q14807 665 aa4.23□□□□□ -1.73
VPS4B-203ENST00000588323 SLC2A7Q6PXP3 512 aa4.23□□□□□ -1.73
VPS4B-203ENST00000588323 WDR53Q7Z5U6 358 aaPredicted RBP4.23□□□□□ -1.73
VPS4B-203ENST00000588323 DTX2Q86UW9 622 aa4.23□□□□□ -1.73
VPS4B-203ENST00000588323 C3orf20Q8ND61 904 aa4.23□□□□□ -1.73
VPS4B-203ENST00000588323 NELL2Q99435 816 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms