RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 PTK7Q13308 1070 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 ZBTB6Q15916 424 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 TCTN1Q2MV58 587 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 ERCC6LQ2NKX8 1250 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 WDR72Q3MJ13 1102 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 XKR4Q5GH76 650 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 CCDC181Q5TID7 509 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 C11orf63Q6NUN7 778 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 SPRED2Q7Z698 418 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 TMCO2Q7Z6W1 182 aaPredicted RBP11.06□□□□□ -0.64
LIG3-203ENST00000585370 DAAM2Q86T65 1068 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 PHF13Q86YI8 300 aaPredicted RBP11.06□□□□□ -0.64
LIG3-203ENST00000585370 CREG2Q8IUH2 290 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 MICALL1Q8N3F8 863 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 PDCL2Q8N4E4 241 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 LRRC52Q8N7C0 313 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 TMEM35BQ8NCS4 154 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 CXorf38Q8TB03 319 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 ADAMTS19Q8TE59 1207 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 ZNF606Q8WXB4 792 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 HPDLQ96IR7 371 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 SNX27Q96L92 541 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 ARID3AQ99856 593 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 MRPL47Q9HD33 250 aaKnown RBP11.06□□□□□ -0.64
LIG3-203ENST00000585370 SNTG2Q9NY99 539 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 PCDHGC3Q9UN70 934 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 AGAP1Q9UPQ3 857 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 PIN4Q9Y237 131 aaKnown RBP11.06□□□□□ -0.64
LIG3-203ENST00000585370 MTCH2Q9Y6C9 303 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 CDY2AQ9Y6F7 541 aa11.06□□□□□ -0.64
LIG3-203ENST00000585370 TCF20Q9UGU0 1960 aaKnown RBP11.05□□□□□ -0.64
LIG3-203ENST00000585370 THAP12O43422 761 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 RPS6KA5O75582 802 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 CXCL10P02778 98 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 ITGB3P05106 788 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 CKBP12277 381 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 BMP1P13497 986 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 ASPAP45381 313 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 TNNC1P63316 161 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 TFF2Q03403 129 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 C1QBPQ07021 282 aaKnown RBP11.05□□□□□ -0.64
LIG3-203ENST00000585370 STILQ15468 1287 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 FAM26DQ5JW98 314 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 TRAF7Q6Q0C0 670 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 LRRC8DQ7L1W4 858 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 NT5DC3Q86UY8 548 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 PALB2Q86YC2 1186 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 MCOLN2Q8IZK6 566 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 ARNTL2Q8WYA1 636 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 RUBCNQ92622 972 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 WNT8BQ93098 351 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 ZNF653Q96CK0 615 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 HES6Q96HZ4 224 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 TANC1Q9C0D5 1861 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 LHX5Q9H2C1 402 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 BRWD1Q9NSI6 2320 aa11.05□□□□□ -0.64
LIG3-203ENST00000585370 NXF1Q9UBU9 619 aaKnown RBP11.05□□□□□ -0.64
LIG3-203ENST00000585370 PUF60Q9UHX1 559 aaKnown RBP11.05□□□□□ -0.64
LIG3-203ENST00000585370 LCHNA4D1U4 455 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 MEFVO15553 781 aaPredicted RBP11.04□□□□□ -0.64
LIG3-203ENST00000585370 BUB1BO60566 1050 aaPredicted RBP11.04□□□□□ -0.64
LIG3-203ENST00000585370 LPXNO60711 386 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 SRGAP2O75044 1071 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 RECQL4O94761 1208 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 FTCDO95954 541 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 CALB1P05937 261 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 VDRP11473 427 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 SKIP12755 728 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 ZSCAN20P17040 1043 aaPredicted RBP11.04□□□□□ -0.64
LIG3-203ENST00000585370 PAX3P23760 479 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 POLR2BP30876 1174 aaKnown RBP11.04□□□□□ -0.64
LIG3-203ENST00000585370 CDH5P33151 784 aaPredicted RBP11.04□□□□□ -0.64
LIG3-203ENST00000585370 SLC1A1P43005 524 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 RAB27AP51159 221 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 WDR5P61964 334 aaKnown RBP11.04□□□□□ -0.64
LIG3-203ENST00000585370 ELF2Q15723 593 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 TRIM71Q2Q1W2 868 aaKnown RBP11.04□□□□□ -0.64
LIG3-203ENST00000585370 GLE1Q53GS7 698 aaKnown RBP11.04□□□□□ -0.64
LIG3-203ENST00000585370 TEX35Q5T0J7 233 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 UBXN11Q5T124 520 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 TWF2Q6IBS0 349 aaKnown RBP11.04□□□□□ -0.64
LIG3-203ENST00000585370 FAM228AQ86W67 206 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 MMGT1Q8N4V1 131 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 UBL4BQ8N7F7 174 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 MSANTD4Q8NCY6 345 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 TMEM40Q8WWA1 233 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 ARHGEF26Q96DR7 871 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 CYFIP2Q96F07 1278 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 FAM84AQ96KN4 292 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 ZNF560Q96MR9 790 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 MMS19Q96T76 1030 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 UHRF1Q96T88 793 aaPredicted RBP11.04□□□□□ -0.64
LIG3-203ENST00000585370 NAP1L3Q99457 506 aaPredicted RBP11.04□□□□□ -0.64
LIG3-203ENST00000585370 TRAIPQ9BWF2 469 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 EIF2AQ9BY44 585 aaKnown RBP11.04□□□□□ -0.64
LIG3-203ENST00000585370 MIS12Q9H081 205 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 TSPYL2Q9H2G4 693 aaPredicted RBP11.04□□□□□ -0.64
LIG3-203ENST00000585370 SLC38A7Q9NVC3 462 aa11.04□□□□□ -0.64
LIG3-203ENST00000585370 CNOT8Q9UFF9 292 aaKnown RBP11.04□□□□□ -0.64
LIG3-203ENST00000585370 TTC7AQ9ULT0 858 aaPredicted RBP11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms