RNA–Protein interactions for RNA: ENST00000583649.1

CASC3-208, Transcript of CASC3, exon junction complex subunit, human

TSL 3

Gene CASC3, Length 577 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CASC3-208	ENST00000583649	TXK	P42681	527 aa		12.09	□□□□□ -0.47
CASC3-208	ENST00000583649	MRPS21	P82921	87 aa	Known RBP	12.09	□□□□□ -0.47
CASC3-208	ENST00000583649	ZNF268	Q14587	947 aa	Predicted RBP	12.09	□□□□□ -0.47
CASC3-208	ENST00000583649	CRY1	Q16526	586 aa		12.09	□□□□□ -0.47
CASC3-208	ENST00000583649	NT5DC1	Q5TFE4	455 aa		12.09	□□□□□ -0.47
CASC3-208	ENST00000583649	SLC36A4	Q6YBV0	504 aa		12.09	□□□□□ -0.47
CASC3-208	ENST00000583649	ARMCX6	Q7L4S7	300 aa		12.09	□□□□□ -0.47
CASC3-208	ENST00000583649	ZNF605	Q86T29	641 aa		12.09	□□□□□ -0.47
CASC3-208	ENST00000583649	TMEFF1	Q8IYR6	380 aa		12.09	□□□□□ -0.47
CASC3-208	ENST00000583649	PGBD3	Q8N328	593 aa		12.09	□□□□□ -0.47
CASC3-208	ENST00000583649	MAB21L3	Q8N8X9	362 aa		12.09	□□□□□ -0.47
CASC3-208	ENST00000583649	ATAD1	Q8NBU5	361 aa		12.09	□□□□□ -0.47
CASC3-208	ENST00000583649	CHFR	Q96EP1	664 aa		12.09	□□□□□ -0.47
CASC3-208	ENST00000583649	POLR3C	Q9BUI4	534 aa	Predicted RBP	12.09	□□□□□ -0.47
CASC3-208	ENST00000583649	SMG9	Q9H0W8	520 aa	Known RBP	12.09	□□□□□ -0.47
CASC3-208	ENST00000583649	CDT1	Q9H211	546 aa		12.09	□□□□□ -0.47
CASC3-208	ENST00000583649	POLR3B	Q9NW08	1133 aa	Predicted RBP	12.09	□□□□□ -0.47
CASC3-208	ENST00000583649	CACNA2D2	Q9NY47	1150 aa		12.09	□□□□□ -0.47
CASC3-208	ENST00000583649	MMP17	Q9ULZ9	603 aa		12.09	□□□□□ -0.47
CASC3-208	ENST00000583649	KCNJ14	Q9UNX9	436 aa		12.09	□□□□□ -0.47
CASC3-208	ENST00000583649	USP20	Q9Y2K6	914 aa		12.09	□□□□□ -0.47
CASC3-208	ENST00000583649	RAX	Q9Y2V3	346 aa		12.09	□□□□□ -0.47
CASC3-208	ENST00000583649	NUP210	Q8TEM1	1887 aa	Predicted RBP	12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	CCDC169	A6NNP5	214 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	OR4Q2	P0C623	313 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	ARSA	P15289	507 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	TYMP	P19971	482 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	BCKDHB	P21953	392 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	P2RY2	P41231	377 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	EVC	P57679	992 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	MTF1	Q14872	753 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	C2orf27A	Q580R0	203 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	EOGT	Q5NDL2	527 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	MPZL3	Q6UWV2	235 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	METTL23	Q86XA0	190 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	THEM5	Q8N1Q8	247 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	MINDY1	Q8N5J2	469 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	SPRYD3	Q8NCJ5	442 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	LSM14A	Q8ND56	463 aa	Known RBP	12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	MDGA1	Q8NFP4	955 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	OSCP1	Q8WVF1	389 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	WASF1	Q92558	559 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	USP13	Q92995	863 aa	Predicted RBP	12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	C18orf25	Q96B23	403 aa	Predicted RBP	12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	ZMAT2	Q96NC0	199 aa	Known RBP	12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	ACO2	Q99798	780 aa	Known RBP	12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	AGXT2	Q9BYV1	514 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	PLEKHA5	Q9HAU0	1116 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	FBRSL1	Q9HCM7	1045 aa	Known RBP	12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	UXT	Q9UBK9	157 aa	Predicted RBP	12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	DKK4	Q9UBT3	224 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	MBD1	Q9UIS9	605 aa	Predicted RBP	12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	PILRB	Q9UKJ0	227 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	DSE	Q9UL01	958 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	RBM19	Q9Y4C8	960 aa	Known RBP	12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	TIMM13	Q9Y5L4	95 aa	Predicted RBP	12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	NBEA	Q8NFP9	2946 aa		12.08	□□□□□ -0.48
CASC3-208	ENST00000583649	FLNB	O75369	2602 aa	Known RBP	12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	OTOL1	A6NHN0	477 aa	Predicted RBP	12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	ARHGAP33	O14559	1287 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	NFATC1	O95644	943 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	FTH1P19	P0C7X4	201 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	CPA1	P15085	419 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	GNS	P15586	552 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	CYP3A5	P20815	502 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	PDE6C	P51160	858 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	FAM160A1	Q05DH4	1040 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	STRN3	Q13033	797 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	DMP1	Q13316	513 aa	Predicted RBP	12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	NPY5R	Q15761	445 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	KYAT1	Q16773	422 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	CEP120	Q8N960	986 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	TTC16	Q8NEE8	873 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	OLIG1	Q8TAK6	271 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	MDM1	Q8TC05	714 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	SPPL2B	Q8TCT7	592 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	USP33	Q8TEY7	942 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	BSND	Q8WZ55	320 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	SLC39A7	Q92504	469 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	NUP205	Q92621	2012 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	BBC3	Q96PG8	261 aa	Predicted RBP	12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	TSPAN18	Q96SJ8	248 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	KIFC3	Q9BVG8	833 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	CRISPLD1	Q9H336	500 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	FAM124B	Q9H5Z6	455 aa	Predicted RBP	12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	TMEM134	Q9H6X4	195 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	DNAAF2	Q9NVR5	837 aa	Known RBP	12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	SUSD2	Q9UGT4	822 aa		12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	UBQLN1	Q9UMX0	589 aa	Known RBP	12.07	□□□□□ -0.48
CASC3-208	ENST00000583649	MYMK	A6NI61	221 aa		12.06	□□□□□ -0.48
CASC3-208	ENST00000583649	USP17L7	P0C7H9	530 aa		12.06	□□□□□ -0.48
CASC3-208	ENST00000583649	HARS	P12081	509 aa	Known RBP	12.06	□□□□□ -0.48
CASC3-208	ENST00000583649	MUT	P22033	750 aa		12.06	□□□□□ -0.48
CASC3-208	ENST00000583649	U2AF2	P26368	475 aa	Known RBP eCLIP	12.06	□□□□□ -0.48
CASC3-208	ENST00000583649	KRT2	P35908	639 aa		12.06	□□□□□ -0.48
CASC3-208	ENST00000583649	PTGER3	P43115	390 aa		12.06	□□□□□ -0.48
CASC3-208	ENST00000583649	MATR3	P43243	847 aa	Known RBP eCLIP	12.06	□□□□□ -0.48
CASC3-208	ENST00000583649	ABCG1	P45844	678 aa		12.06	□□□□□ -0.48
CASC3-208	ENST00000583649	SEC13	P55735	322 aa		12.06	□□□□□ -0.48
CASC3-208	ENST00000583649	RPL6	Q02878	288 aa	Known RBP	12.06	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 40 ms