RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 TMPRSS9Q7Z410 1059 aa5.67□□□□□ -1.5
SMCHD1-204ENST00000581226 Q96MF0 132 aa5.67□□□□□ -1.5
SMCHD1-204ENST00000581226 PRRX2Q99811 253 aa5.67□□□□□ -1.5
SMCHD1-204ENST00000581226 HEPHQ9BQS7 1158 aa5.67□□□□□ -1.5
SMCHD1-204ENST00000581226 TTYH3Q9C0H2 523 aa5.67□□□□□ -1.5
SMCHD1-204ENST00000581226 INTS13Q9NVM9 706 aa5.67□□□□□ -1.5
SMCHD1-204ENST00000581226 XPR1Q9UBH6 696 aa5.67□□□□□ -1.5
SMCHD1-204ENST00000581226 HESX1Q9UBX0 185 aa5.67□□□□□ -1.5
SMCHD1-204ENST00000581226 TMX2Q9Y320 296 aa5.67□□□□□ -1.5
SMCHD1-204ENST00000581226 COL4A3Q01955 1670 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 TMEM191CA6NGB0 347 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 MYO1FO00160 1098 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 CYR61O00622 381 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 TBX3O15119 743 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 FRS3O43559 492 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 SOAT2O75908 522 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 BRAFP15056 766 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 EN2P19622 333 aaPredicted RBP5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 ITGALP20701 1170 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 PEX2P28328 305 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 GCLCP48506 637 aaPredicted RBP5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 NDUFV1P49821 464 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 TOB1P50616 345 aaPredicted RBP5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 ARFIP2P53365 341 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 SUMO3P55854 103 aaPredicted RBP5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 UCP3P55916 312 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 BLOC1S1P78537 153 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 TAP1Q03518 808 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 SLC13A2Q13183 592 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 CTBP1Q13363 440 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 FHL2Q14192 279 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 IQCB1Q15051 598 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 LONRF3Q496Y0 759 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 LMBRD2Q68DH5 695 aaPredicted RBP5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 LAIR1Q6GTX8 287 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 FAM9AQ8IZU1 332 aaPredicted RBP5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 DNAJC5GQ8N7S2 189 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 SSH3Q8TE77 659 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 CAVIN3Q969G5 261 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 SUCLG2Q96I99 432 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 SLC46A1Q96NT5 459 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 SPATA5L1Q9BVQ7 753 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 LRRC27Q9C0I9 530 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 TMPRSS5Q9H3S3 457 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 CPNE7Q9UBL6 633 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 DMTF1Q9Y222 760 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 PCDHGB6Q9Y5F9 930 aa5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.66□□□□□ -1.5
SMCHD1-204ENST00000581226 A0A0B4J269 797 aa5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 ISM1B1AKI9 464 aa5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 TRIAP1O43715 76 aa5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 MAP4K4O95819 1239 aaPredicted RBP5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 HKR1P10072 659 aa5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 MYF5P13349 255 aa5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 AVPR1BP47901 424 aa5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 SLC11A2P49281 568 aa5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 TUBB3Q13509 450 aa5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 SEMA5AQ13591 1074 aa5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 POLD3Q15054 466 aaPredicted RBP5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 SF3B3Q15393 1217 aaKnown RBP5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 LAYNQ6UX15 382 aa5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 Q6ZPA2 131 aa5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 CCAR1Q8IX12 1150 aaKnown RBP5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 MPP5Q8N3R9 675 aa5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 LNX2Q8N448 690 aa5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 SLC15A4Q8N697 577 aa5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 AMER2Q8N7J2 671 aa5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 SUPT20HQ8NEM7 779 aa5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 SLC30A5Q8TAD4 765 aa5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 MOGAT1Q96PD6 335 aa5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 TTPALQ9BTX7 342 aa5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 KIAA1586Q9HCI6 787 aa5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 DDX21Q9NR30 783 aaKnown RBP eCLIP5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 SACM1LQ9NTJ5 587 aa5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 ING1Q9UK53 422 aaPredicted RBP5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 FAM50BQ9Y247 325 aa5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.65□□□□□ -1.5
SMCHD1-204ENST00000581226 SPATA31A3Q5VYP0 1347 aa5.65□□□□□ -1.51
SMCHD1-204ENST00000581226 PRC1O43663 620 aa5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 AKAP8O43823 692 aaKnown RBP5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 SRGNP10124 158 aa5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 ZKSCAN1P17029 563 aaPredicted RBP5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 GNALP38405 381 aa5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 FMO1Q01740 532 aa5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 FSTL1Q12841 308 aa5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 RAB32Q13637 225 aa5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 HLTFQ14527 1009 aaKnown RBP eCLIP5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 CNGA2Q16280 664 aa5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 COBLL1Q53SF7 1204 aa5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 CCDC181Q5TID7 509 aa5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 TMEM108Q6UXF1 575 aa5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 Q6YL49 198 aa5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 SLC44A3Q8N4M1 653 aa5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 BEND2Q8NDZ0 799 aa5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 APIPQ96GX9 242 aa5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 AIFM2Q9BRQ8 373 aa5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 APOL5Q9BWW9 433 aa5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 DPH1Q9BZG8 443 aa5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 PCED1AQ9H1Q7 454 aa5.64□□□□□ -1.51
SMCHD1-204ENST00000581226 ZNF287Q9HBT7 754 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms