RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 KLHL10Q6JEL2 608 aa20.71■□□□□ 0.91
SS18-208ENST00000577751 TDRD5Q8NAT2 981 aaKnown RBP20.71■□□□□ 0.91
SS18-208ENST00000577751 NELFBQ8WX92 580 aa20.71■□□□□ 0.91
SS18-208ENST00000577751 ACSF2Q96CM8 615 aaPredicted RBP20.71■□□□□ 0.91
SS18-208ENST00000577751 MMS19Q96T76 1030 aa20.71■□□□□ 0.91
SS18-208ENST00000577751 AVENQ9NQS1 362 aaPredicted RBP20.71■□□□□ 0.91
SS18-208ENST00000577751 YIPF1Q9Y548 306 aa20.71■□□□□ 0.91
SS18-208ENST00000577751 PTPN2P17706 415 aa20.7■□□□□ 0.9
SS18-208ENST00000577751 LMO2P25791 158 aa20.7■□□□□ 0.9
SS18-208ENST00000577751 PCSK1P29120 753 aa20.7■□□□□ 0.9
SS18-208ENST00000577751 GCLMP48507 274 aa20.7■□□□□ 0.9
SS18-208ENST00000577751 TNNC1P63316 161 aa20.7■□□□□ 0.9
SS18-208ENST00000577751 TSPY1Q01534 308 aa20.7■□□□□ 0.9
SS18-208ENST00000577751 TWF1Q12792 350 aa20.7■□□□□ 0.9
SS18-208ENST00000577751 SGSM1Q2NKQ1 1148 aa20.7■□□□□ 0.9
SS18-208ENST00000577751 FILIP1Q7Z7B0 1213 aa20.7■□□□□ 0.9
SS18-208ENST00000577751 TTC9BQ8N6N2 239 aa20.7■□□□□ 0.9
SS18-208ENST00000577751 SPPL2BQ8TCT7 592 aa20.7■□□□□ 0.9
SS18-208ENST00000577751 GPT2Q8TD30 523 aa20.7■□□□□ 0.9
SS18-208ENST00000577751 TAF4BQ92750 862 aa20.7■□□□□ 0.9
SS18-208ENST00000577751 CEP63Q96MT8 703 aa20.7■□□□□ 0.9
SS18-208ENST00000577751 MRPL45Q9BRJ2 306 aaKnown RBP20.7■□□□□ 0.9
SS18-208ENST00000577751 TMEM8AQ9HCN3 771 aa20.7■□□□□ 0.9
SS18-208ENST00000577751 TMLHEQ9NVH6 421 aa20.7■□□□□ 0.9
SS18-208ENST00000577751 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.7■□□□□ 0.9
SS18-208ENST00000577751 CEP72Q9P209 647 aa20.7■□□□□ 0.9
SS18-208ENST00000577751 SLC27A5Q9Y2P5 690 aa20.7■□□□□ 0.9
SS18-208ENST00000577751 NME7Q9Y5B8 376 aa20.7■□□□□ 0.9
SS18-208ENST00000577751 BICDL2A1A5D9 508 aa20.69■□□□□ 0.9
SS18-208ENST00000577751 HCRTO43612 131 aa20.69■□□□□ 0.9
SS18-208ENST00000577751 ASS1P00966 412 aaKnown RBP20.69■□□□□ 0.9
SS18-208ENST00000577751 HLA-DRAP01903 254 aa20.69■□□□□ 0.9
SS18-208ENST00000577751 RHOP08100 348 aa20.69■□□□□ 0.9
SS18-208ENST00000577751 FSHRP23945 695 aa20.69■□□□□ 0.9
SS18-208ENST00000577751 ACAT1P24752 427 aaKnown RBP20.69■□□□□ 0.9
SS18-208ENST00000577751 TUFMP49411 452 aaKnown RBP20.69■□□□□ 0.9
SS18-208ENST00000577751 PAK1Q13153 545 aa20.69■□□□□ 0.9
SS18-208ENST00000577751 NFE2Q16621 373 aaPredicted RBP20.69■□□□□ 0.9
SS18-208ENST00000577751 ZNF699Q32M78 642 aa20.69■□□□□ 0.9
SS18-208ENST00000577751 PABPC1LQ4VXU2 614 aaKnown RBP20.69■□□□□ 0.9
SS18-208ENST00000577751 ZNF667Q5HYK9 610 aa20.69■□□□□ 0.9
SS18-208ENST00000577751 FAM171BQ6P995 826 aa20.69■□□□□ 0.9
SS18-208ENST00000577751 MYADMQ96S97 322 aa20.69■□□□□ 0.9
SS18-208ENST00000577751 NUP62CLQ9H1M0 184 aa20.69■□□□□ 0.9
SS18-208ENST00000577751 NXF1Q9UBU9 619 aaKnown RBP20.69■□□□□ 0.9
SS18-208ENST00000577751 CTNND2Q9UQB3 1225 aa20.69■□□□□ 0.9
SS18-208ENST00000577751 MYO10Q9HD67 2058 aa20.69■□□□□ 0.9
SS18-208ENST00000577751 GOLGA6L22H0YM25 854 aa20.68■□□□□ 0.9
SS18-208ENST00000577751 HAPLN1P10915 354 aaPredicted RBP20.68■□□□□ 0.9
SS18-208ENST00000577751 ALDH1A3P47895 512 aa20.68■□□□□ 0.9
SS18-208ENST00000577751 PLD1Q13393 1074 aa20.68■□□□□ 0.9
SS18-208ENST00000577751 KRT39Q6A163 491 aa20.68■□□□□ 0.9
SS18-208ENST00000577751 FRMD5Q7Z6J6 570 aa20.68■□□□□ 0.9
SS18-208ENST00000577751 ELMOD1Q8N336 334 aa20.68■□□□□ 0.9
SS18-208ENST00000577751 ITFG1Q8TB96 612 aa20.68■□□□□ 0.9
SS18-208ENST00000577751 TAS1R2Q8TE23 839 aa20.68■□□□□ 0.9
SS18-208ENST00000577751 ZNF512Q96ME7 567 aaPredicted RBP20.68■□□□□ 0.9
SS18-208ENST00000577751 DNAJC25Q9H1X3 360 aa20.68■□□□□ 0.9
SS18-208ENST00000577751 EPHX3Q9H6B9 360 aa20.68■□□□□ 0.9
SS18-208ENST00000577751 EPS15L1Q9UBC2 864 aa20.68■□□□□ 0.9
SS18-208ENST00000577751 ARMCX3Q9UH62 379 aaPredicted RBP20.68■□□□□ 0.9
SS18-208ENST00000577751 MUTYHQ9UIF7 546 aa20.68■□□□□ 0.9
SS18-208ENST00000577751 GTF3C4Q9UKN8 822 aa20.68■□□□□ 0.9
SS18-208ENST00000577751 CDH9Q9ULB4 789 aa20.68■□□□□ 0.9
SS18-208ENST00000577751 PCDHB5Q9Y5E4 795 aa20.68■□□□□ 0.9
SS18-208ENST00000577751 ZFP37Q9Y6Q3 630 aaPredicted RBP20.68■□□□□ 0.9
SS18-208ENST00000577751 MYBPHLA2RUH7 354 aa20.67■□□□□ 0.9
SS18-208ENST00000577751 DCXO43602 365 aa20.67■□□□□ 0.9
SS18-208ENST00000577751 STX10O60499 249 aa20.67■□□□□ 0.9
SS18-208ENST00000577751 ATP2C2O75185 946 aa20.67■□□□□ 0.9
SS18-208ENST00000577751 LAMP2P13473 410 aa20.67■□□□□ 0.9
SS18-208ENST00000577751 ALADP13716 330 aa20.67■□□□□ 0.9
SS18-208ENST00000577751 GBP2P32456 591 aaPredicted RBP20.67■□□□□ 0.9
SS18-208ENST00000577751 GNL1P36915 607 aaPredicted RBP20.67■□□□□ 0.9
SS18-208ENST00000577751 PIK3CAP42336 1068 aa20.67■□□□□ 0.9
SS18-208ENST00000577751 EPHA5P54756 1037 aa20.67■□□□□ 0.9
SS18-208ENST00000577751 STX17P56962 302 aa20.67■□□□□ 0.9
SS18-208ENST00000577751 SLC5A9Q2M3M2 681 aa20.67■□□□□ 0.9
SS18-208ENST00000577751 PRSS36Q5K4E3 855 aa20.67■□□□□ 0.9
SS18-208ENST00000577751 GET4Q7L5D6 327 aaPredicted RBP20.67■□□□□ 0.9
SS18-208ENST00000577751 MLKLQ8NB16 471 aa20.67■□□□□ 0.9
SS18-208ENST00000577751 ELMO3Q96BJ8 720 aa20.67■□□□□ 0.9
SS18-208ENST00000577751 CORO1BQ9BR76 489 aa20.67■□□□□ 0.9
SS18-208ENST00000577751 LRRC3Q9BY71 257 aa20.67■□□□□ 0.9
SS18-208ENST00000577751 MMRN2Q9H8L6 949 aa20.67■□□□□ 0.9
SS18-208ENST00000577751 METTL14Q9HCE5 456 aaKnown RBP20.67■□□□□ 0.9
SS18-208ENST00000577751 ABCB6Q9NP58 842 aa20.67■□□□□ 0.9
SS18-208ENST00000577751 ABI2Q9NYB9 513 aaPredicted RBP20.67■□□□□ 0.9
SS18-208ENST00000577751 LIMD1Q9UGP4 676 aa20.67■□□□□ 0.9
SS18-208ENST00000577751 ASB3Q9Y575 518 aa20.67■□□□□ 0.9
SS18-208ENST00000577751 SOAT2O75908 522 aa20.66■□□□□ 0.9
SS18-208ENST00000577751 MICAL2O94851 1124 aa20.66■□□□□ 0.9
SS18-208ENST00000577751 PDGFRBP09619 1106 aa20.66■□□□□ 0.9
SS18-208ENST00000577751 CDR1P51861 262 aa20.66■□□□□ 0.9
SS18-208ENST00000577751 EPHB3P54753 998 aa20.66■□□□□ 0.9
SS18-208ENST00000577751 CDH8P55286 799 aa20.66■□□□□ 0.9
SS18-208ENST00000577751 CCDC142Q17RM4 750 aa20.66■□□□□ 0.9
SS18-208ENST00000577751 MGAT5BQ3V5L5 792 aa20.66■□□□□ 0.9
SS18-208ENST00000577751 CFAP221Q4G0U5 840 aa20.66■□□□□ 0.9
SS18-208ENST00000577751 IQCEQ6IPM2 695 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms