RNA–Protein interactions for RNA: ENST00000573903.1

CCDC40-210, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 561 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-210ENST00000573903 PNPLA4P41247 253 aa13.15□□□□□ -0.3
CCDC40-210ENST00000573903 SOX9P48436 509 aa13.15□□□□□ -0.3
CCDC40-210ENST00000573903 TSPY1Q01534 308 aa13.15□□□□□ -0.3
CCDC40-210ENST00000573903 GRIN1Q05586 938 aa13.15□□□□□ -0.3
CCDC40-210ENST00000573903 SIM2Q14190 667 aaPredicted RBP13.15□□□□□ -0.3
CCDC40-210ENST00000573903 LPAL2Q16609 132 aa13.15□□□□□ -0.3
CCDC40-210ENST00000573903 DYMQ7RTS9 669 aa13.15□□□□□ -0.3
CCDC40-210ENST00000573903 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.15□□□□□ -0.3
CCDC40-210ENST00000573903 SFR1Q86XK3 245 aa13.15□□□□□ -0.3
CCDC40-210ENST00000573903 TTC8Q8TAM2 541 aa13.15□□□□□ -0.3
CCDC40-210ENST00000573903 ZFYVE19Q96K21 471 aa13.15□□□□□ -0.3
CCDC40-210ENST00000573903 FIZ1Q96SL8 496 aa13.15□□□□□ -0.3
CCDC40-210ENST00000573903 MKNK1Q9BUB5 465 aa13.15□□□□□ -0.3
CCDC40-210ENST00000573903 MRPL44Q9H9J2 332 aaKnown RBP13.15□□□□□ -0.3
CCDC40-210ENST00000573903 RBM12Q9NTZ6 932 aaKnown RBP13.15□□□□□ -0.3
CCDC40-210ENST00000573903 GTSE1Q9NYZ3 720 aa13.15□□□□□ -0.3
CCDC40-210ENST00000573903 STYXL1Q9Y6J8 313 aa13.15□□□□□ -0.3
CCDC40-210ENST00000573903 ZNF638Q14966 1978 aaKnown RBP13.14□□□□□ -0.31
CCDC40-210ENST00000573903 KPNA7A9QM74 516 aa13.14□□□□□ -0.31
CCDC40-210ENST00000573903 TISP43B9A030 160 aa13.14□□□□□ -0.31
CCDC40-210ENST00000573903 LDHAP00338 332 aaKnown RBP13.14□□□□□ -0.31
CCDC40-210ENST00000573903 PDIA4P13667 645 aaKnown RBP13.14□□□□□ -0.31
CCDC40-210ENST00000573903 GAP43P17677 238 aa13.14□□□□□ -0.31
CCDC40-210ENST00000573903 ATF6P18850 670 aa13.14□□□□□ -0.31
CCDC40-210ENST00000573903 WEE1P30291 646 aa13.14□□□□□ -0.31
CCDC40-210ENST00000573903 AVPR1AP37288 418 aa13.14□□□□□ -0.31
CCDC40-210ENST00000573903 BFSP1Q12934 665 aa13.14□□□□□ -0.31
CCDC40-210ENST00000573903 PON2Q15165 354 aa13.14□□□□□ -0.31
CCDC40-210ENST00000573903 ITPRIPL2Q3MIP1 535 aa13.14□□□□□ -0.31
CCDC40-210ENST00000573903 RRAGBQ5VZM2 374 aa13.14□□□□□ -0.31
CCDC40-210ENST00000573903 WSCD1Q658N2 575 aa13.14□□□□□ -0.31
CCDC40-210ENST00000573903 ZNF720Q7Z2F6 126 aa13.14□□□□□ -0.31
CCDC40-210ENST00000573903 LONP2Q86WA8 852 aa13.14□□□□□ -0.31
CCDC40-210ENST00000573903 SYNPOQ8N3V7 929 aa13.14□□□□□ -0.31
CCDC40-210ENST00000573903 GIPC2Q8TF65 315 aa13.14□□□□□ -0.31
CCDC40-210ENST00000573903 CACTINQ8WUQ7 758 aaKnown RBP13.14□□□□□ -0.31
CCDC40-210ENST00000573903 ACCSQ96QU6 501 aa13.14□□□□□ -0.31
CCDC40-210ENST00000573903 RTKNQ9BST9 563 aa13.14□□□□□ -0.31
CCDC40-210ENST00000573903 R3HCC1Q9Y3T6 440 aaKnown RBP13.14□□□□□ -0.31
CCDC40-210ENST00000573903 PCDHB5Q9Y5E4 795 aa13.14□□□□□ -0.31
CCDC40-210ENST00000573903 KIF26AQ9ULI4 1882 aaPredicted RBP13.14□□□□□ -0.31
CCDC40-210ENST00000573903 ZNF292O60281 2723 aa13.13□□□□□ -0.31
CCDC40-210ENST00000573903 CHURC1-FNTBB4DL54 471 aa13.13□□□□□ -0.31
CCDC40-210ENST00000573903 STX6O43752 255 aa13.13□□□□□ -0.31
CCDC40-210ENST00000573903 LRP3O75074 770 aa13.13□□□□□ -0.31
CCDC40-210ENST00000573903 PAPSS2O95340 614 aaPredicted RBP13.13□□□□□ -0.31
CCDC40-210ENST00000573903 GCNT3O95395 438 aa13.13□□□□□ -0.31
CCDC40-210ENST00000573903 PRAMEF12O95522 483 aa13.13□□□□□ -0.31
CCDC40-210ENST00000573903 RETP07949 1114 aa13.13□□□□□ -0.31
CCDC40-210ENST00000573903 HAPLN1P10915 354 aaPredicted RBP13.13□□□□□ -0.31
CCDC40-210ENST00000573903 DDX6P26196 483 aaKnown RBP eCLIP13.13□□□□□ -0.31
CCDC40-210ENST00000573903 FNTBP49356 437 aa13.13□□□□□ -0.31
CCDC40-210ENST00000573903 CDR1P51861 262 aa13.13□□□□□ -0.31
CCDC40-210ENST00000573903 TFAMQ00059 246 aaKnown RBP13.13□□□□□ -0.31
CCDC40-210ENST00000573903 AMPD2Q01433 879 aa13.13□□□□□ -0.31
CCDC40-210ENST00000573903 SPEM2Q0P670 501 aa13.13□□□□□ -0.31
CCDC40-210ENST00000573903 NFE2Q16621 373 aaPredicted RBP13.13□□□□□ -0.31
CCDC40-210ENST00000573903 HEATR6Q6AI08 1181 aaKnown RBP13.13□□□□□ -0.31
CCDC40-210ENST00000573903 Q6ZS52 159 aa13.13□□□□□ -0.31
CCDC40-210ENST00000573903 CEP68Q76N32 757 aa13.13□□□□□ -0.31
CCDC40-210ENST00000573903 SV2BQ7L1I2 683 aa13.13□□□□□ -0.31
CCDC40-210ENST00000573903 EFCAB13Q8IY85 973 aa13.13□□□□□ -0.31
CCDC40-210ENST00000573903 SYCP3Q8IZU3 236 aa13.13□□□□□ -0.31
CCDC40-210ENST00000573903 CMTM8Q8IZV2 173 aa13.13□□□□□ -0.31
CCDC40-210ENST00000573903 MRPS31Q92665 395 aaKnown RBP13.13□□□□□ -0.31
CCDC40-210ENST00000573903 EXOC4Q96A65 974 aa13.13□□□□□ -0.31
CCDC40-210ENST00000573903 EPSTI1Q96J88 318 aa13.13□□□□□ -0.31
CCDC40-210ENST00000573903 FAM213AQ9BRX8 229 aa13.13□□□□□ -0.31
CCDC40-210ENST00000573903 KIF9Q9HAQ2 790 aa13.13□□□□□ -0.31
CCDC40-210ENST00000573903 DMXL1Q9Y485 3027 aa13.13□□□□□ -0.31
CCDC40-210ENST00000573903 DENND4CQ5VZ89 1909 aa13.12□□□□□ -0.31
CCDC40-210ENST00000573903 FOXD2O60548 495 aaPredicted RBP13.12□□□□□ -0.31
CCDC40-210ENST00000573903 HUS1O60921 280 aa13.12□□□□□ -0.31
CCDC40-210ENST00000573903 PRPF40AO75400 957 aaKnown RBP13.12□□□□□ -0.31
CCDC40-210ENST00000573903 ITGB3P05106 788 aa13.12□□□□□ -0.31
CCDC40-210ENST00000573903 CSH1P0DML2 217 aa13.12□□□□□ -0.31
CCDC40-210ENST00000573903 CSH2P0DML3 217 aa13.12□□□□□ -0.31
CCDC40-210ENST00000573903 IDEP14735 1019 aa13.12□□□□□ -0.31
CCDC40-210ENST00000573903 POLR2BP30876 1174 aaKnown RBP13.12□□□□□ -0.31
CCDC40-210ENST00000573903 ATXN1P54253 815 aaKnown RBP13.12□□□□□ -0.31
CCDC40-210ENST00000573903 MYL7Q01449 175 aa13.12□□□□□ -0.31
CCDC40-210ENST00000573903 TNK2Q07912 1038 aa13.12□□□□□ -0.31
CCDC40-210ENST00000573903 ALCAMQ13740 583 aa13.12□□□□□ -0.31
CCDC40-210ENST00000573903 GAS6Q14393 721 aa13.12□□□□□ -0.31
CCDC40-210ENST00000573903 L1TD1Q5T7N2 865 aaKnown RBP13.12□□□□□ -0.31
CCDC40-210ENST00000573903 CC2D1AQ6P1N0 951 aaPredicted RBP13.12□□□□□ -0.31
CCDC40-210ENST00000573903 TXNDC11Q6PKC3 985 aa13.12□□□□□ -0.31
CCDC40-210ENST00000573903 BRSK2Q8IWQ3 736 aa13.12□□□□□ -0.31
CCDC40-210ENST00000573903 MAB21L3Q8N8X9 362 aa13.12□□□□□ -0.31
CCDC40-210ENST00000573903 NOC3LQ8WTT2 800 aaKnown RBP13.12□□□□□ -0.31
CCDC40-210ENST00000573903 ZSCAN16Q9H4T2 348 aaPredicted RBP13.12□□□□□ -0.31
CCDC40-210ENST00000573903 IL21Q9HBE4 155 aa13.12□□□□□ -0.31
CCDC40-210ENST00000573903 RBAKQ9NYW8 714 aaPredicted RBP13.12□□□□□ -0.31
CCDC40-210ENST00000573903 TBC1D7Q9P0N9 293 aa13.12□□□□□ -0.31
CCDC40-210ENST00000573903 UXTQ9UBK9 157 aaPredicted RBP13.12□□□□□ -0.31
CCDC40-210ENST00000573903 MAGED2Q9UNF1 606 aaPredicted RBP13.12□□□□□ -0.31
CCDC40-210ENST00000573903 PCDHB13Q9Y5F0 798 aa13.12□□□□□ -0.31
CCDC40-210ENST00000573903 OBSL1O75147 1896 aa13.12□□□□□ -0.31
CCDC40-210ENST00000573903 PPP1R37O75864 691 aa13.11□□□□□ -0.31
CCDC40-210ENST00000573903 KRT19P08727 400 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms