RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 IL21Q9HBE4 155 aa17.6■□□□□ 0.41
CLK3-223ENST00000568488 ORC3Q9UBD5 711 aaPredicted RBP17.6■□□□□ 0.41
CLK3-223ENST00000568488 THADAQ6YHU6 1953 aa17.59■□□□□ 0.41
CLK3-223ENST00000568488 ADAMTS20P59510 1910 aa17.59■□□□□ 0.41
CLK3-223ENST00000568488 LARGE1O95461 756 aa17.59■□□□□ 0.41
CLK3-223ENST00000568488 RPA1P27694 616 aa17.59■□□□□ 0.41
CLK3-223ENST00000568488 MCM7P33993 719 aa17.59■□□□□ 0.41
CLK3-223ENST00000568488 TUFMP49411 452 aaKnown RBP17.59■□□□□ 0.41
CLK3-223ENST00000568488 ANO7Q6IWH7 933 aa17.59■□□□□ 0.41
CLK3-223ENST00000568488 ARMCX6Q7L4S7 300 aa17.59■□□□□ 0.41
CLK3-223ENST00000568488 USP13Q92995 863 aaPredicted RBP17.59■□□□□ 0.41
CLK3-223ENST00000568488 TMEM134Q9H6X4 195 aa17.59■□□□□ 0.41
CLK3-223ENST00000568488 TDP1Q9NUW8 608 aa17.59■□□□□ 0.41
CLK3-223ENST00000568488 ANKFY1Q9P2R3 1169 aa17.59■□□□□ 0.41
CLK3-223ENST00000568488 GPSM3Q9Y4H4 160 aa17.59■□□□□ 0.41
CLK3-223ENST00000568488 EIF4E1BA6NMX2 242 aaKnown RBP17.58■□□□□ 0.4
CLK3-223ENST00000568488 BTBD18B2RXH4 712 aa17.58■□□□□ 0.4
CLK3-223ENST00000568488 MAP3K13O43283 966 aa17.58■□□□□ 0.4
CLK3-223ENST00000568488 ENGP17813 658 aa17.58■□□□□ 0.4
CLK3-223ENST00000568488 PROZP22891 400 aa17.58■□□□□ 0.4
CLK3-223ENST00000568488 NMT1P30419 496 aaKnown RBP17.58■□□□□ 0.4
CLK3-223ENST00000568488 PDGFRLQ15198 375 aa17.58■□□□□ 0.4
CLK3-223ENST00000568488 COL28A1Q2UY09 1125 aa17.58■□□□□ 0.4
CLK3-223ENST00000568488 SLC39A12Q504Y0 691 aa17.58■□□□□ 0.4
CLK3-223ENST00000568488 TAS1R3Q7RTX0 852 aa17.58■□□□□ 0.4
CLK3-223ENST00000568488 CPA6Q8N4T0 437 aa17.58■□□□□ 0.4
CLK3-223ENST00000568488 WASF1Q92558 559 aa17.58■□□□□ 0.4
CLK3-223ENST00000568488 EZH1Q92800 747 aaPredicted RBP17.58■□□□□ 0.4
CLK3-223ENST00000568488 KMT5AQ9NQR1 393 aa17.58■□□□□ 0.4
CLK3-223ENST00000568488 EVLQ9UI08 416 aaPredicted RBP17.58■□□□□ 0.4
CLK3-223ENST00000568488 TBX20Q9UMR3 447 aa17.58■□□□□ 0.4
CLK3-223ENST00000568488 ASCC3Q8N3C0 2202 aaKnown RBP17.57■□□□□ 0.4
CLK3-223ENST00000568488 CITO14578 2027 aa17.57■□□□□ 0.4
CLK3-223ENST00000568488 H0Y626 953 aa17.57■□□□□ 0.4
CLK3-223ENST00000568488 ABLIM1O14639 778 aa17.57■□□□□ 0.4
CLK3-223ENST00000568488 TRIM16O95361 564 aa17.57■□□□□ 0.4
CLK3-223ENST00000568488 ATF6P18850 670 aa17.57■□□□□ 0.4
CLK3-223ENST00000568488 LRPAP1P30533 357 aa17.57■□□□□ 0.4
CLK3-223ENST00000568488 MATR3P43243 847 aaKnown RBP eCLIP17.57■□□□□ 0.4
CLK3-223ENST00000568488 FOSBP53539 338 aa17.57■□□□□ 0.4
CLK3-223ENST00000568488 DMP1Q13316 513 aaPredicted RBP17.57■□□□□ 0.4
CLK3-223ENST00000568488 C2orf27AQ580R0 203 aa17.57■□□□□ 0.4
CLK3-223ENST00000568488 ECT2Q9H8V3 914 aa17.57■□□□□ 0.4
CLK3-223ENST00000568488 PDRG1Q9NUG6 133 aa17.57■□□□□ 0.4
CLK3-223ENST00000568488 ZMYM5Q9UJ78 669 aa17.57■□□□□ 0.4
CLK3-223ENST00000568488 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.56■□□□□ 0.4
CLK3-223ENST00000568488 CXCL8P10145 99 aa17.56■□□□□ 0.4
CLK3-223ENST00000568488 ODC1P11926 461 aa17.56■□□□□ 0.4
CLK3-223ENST00000568488 TYMPP19971 482 aa17.56■□□□□ 0.4
CLK3-223ENST00000568488 CCT6AP40227 531 aaKnown RBP17.56■□□□□ 0.4
CLK3-223ENST00000568488 GUCY2FP51841 1108 aa17.56■□□□□ 0.4
CLK3-223ENST00000568488 ATXN3P54252 364 aaPredicted RBP17.56■□□□□ 0.4
CLK3-223ENST00000568488 SEC13P55735 322 aa17.56■□□□□ 0.4
CLK3-223ENST00000568488 SCAPQ12770 1279 aa17.56■□□□□ 0.4
CLK3-223ENST00000568488 ECM1Q16610 540 aa17.56■□□□□ 0.4
CLK3-223ENST00000568488 TXNDC8Q6A555 127 aa17.56■□□□□ 0.4
CLK3-223ENST00000568488 LPCAT2Q7L5N7 544 aa17.56■□□□□ 0.4
CLK3-223ENST00000568488 PIP4P1Q86T03 277 aa17.56■□□□□ 0.4
CLK3-223ENST00000568488 TMEFF1Q8IYR6 380 aa17.56■□□□□ 0.4
CLK3-223ENST00000568488 HDDC3Q8N4P3 179 aa17.56■□□□□ 0.4
CLK3-223ENST00000568488 RIN3Q8TB24 985 aa17.56■□□□□ 0.4
CLK3-223ENST00000568488 GTPBP2Q9BX10 602 aaKnown RBP17.56■□□□□ 0.4
CLK3-223ENST00000568488 KIF9Q9HAQ2 790 aa17.56■□□□□ 0.4
CLK3-223ENST00000568488 TMEM74BQ9NUR3 256 aa17.56■□□□□ 0.4
CLK3-223ENST00000568488 HSFX1Q9UBD0 423 aa17.56■□□□□ 0.4
CLK3-223ENST00000568488 UBQLN1Q9UMX0 589 aaKnown RBP17.56■□□□□ 0.4
CLK3-223ENST00000568488 RBM19Q9Y4C8 960 aaKnown RBP17.56■□□□□ 0.4
CLK3-223ENST00000568488 SMG1Q96Q15 3661 aaKnown RBP17.56■□□□□ 0.4
CLK3-223ENST00000568488 CAPNS1P04632 268 aa17.55■□□□□ 0.4
CLK3-223ENST00000568488 AARSP49588 968 aaKnown RBP eCLIP17.55■□□□□ 0.4
CLK3-223ENST00000568488 SEMA3BQ13214 749 aa17.55■□□□□ 0.4
CLK3-223ENST00000568488 NOLC1Q14978 699 aaKnown RBP eCLIP17.55■□□□□ 0.4
CLK3-223ENST00000568488 DIS3L2Q8IYB7 885 aaKnown RBP17.55■□□□□ 0.4
CLK3-223ENST00000568488 CCDC33Q8N5R6 958 aa17.55■□□□□ 0.4
CLK3-223ENST00000568488 OR10T2Q8NGX3 314 aa17.55■□□□□ 0.4
CLK3-223ENST00000568488 HNRNPLLQ8WVV9 542 aaKnown RBP17.55■□□□□ 0.4
CLK3-223ENST00000568488 RLN3Q8WXF3 142 aa17.55■□□□□ 0.4
CLK3-223ENST00000568488 SENP8Q96LD8 212 aa17.55■□□□□ 0.4
CLK3-223ENST00000568488 CNOT6LQ96LI5 555 aaKnown RBP17.55■□□□□ 0.4
CLK3-223ENST00000568488 DUS2Q9NX74 493 aaKnown RBP17.55■□□□□ 0.4
CLK3-223ENST00000568488 ARHGAP28Q9P2N2 729 aa17.55■□□□□ 0.4
CLK3-223ENST00000568488 MBD1Q9UIS9 605 aaPredicted RBP17.55■□□□□ 0.4
CLK3-223ENST00000568488 MAGED2Q9UNF1 606 aaPredicted RBP17.55■□□□□ 0.4
CLK3-223ENST00000568488 KIAA1024Q9UPX6 916 aa17.55■□□□□ 0.4
CLK3-223ENST00000568488 PCNX2A6NKB5 2137 aa17.54■□□□□ 0.4
CLK3-223ENST00000568488 FREM2Q5SZK8 3169 aa17.54■□□□□ 0.4
CLK3-223ENST00000568488 FAM221BA6H8Z2 402 aa17.54■□□□□ 0.4
CLK3-223ENST00000568488 PPEF2O14830 753 aa17.54■□□□□ 0.4
CLK3-223ENST00000568488 SLC16A4O15374 487 aa17.54■□□□□ 0.4
CLK3-223ENST00000568488 HIP1RO75146 1068 aa17.54■□□□□ 0.4
CLK3-223ENST00000568488 TOM1L1O75674 476 aa17.54■□□□□ 0.4
CLK3-223ENST00000568488 REC8O95072 547 aa17.54■□□□□ 0.4
CLK3-223ENST00000568488 CTDNEP1O95476 244 aa17.54■□□□□ 0.4
CLK3-223ENST00000568488 CFIP05156 583 aa17.54■□□□□ 0.4
CLK3-223ENST00000568488 CYP3A5P20815 502 aa17.54■□□□□ 0.4
CLK3-223ENST00000568488 DDX6P26196 483 aaKnown RBP eCLIP17.54■□□□□ 0.4
CLK3-223ENST00000568488 IFNAR2P48551 515 aa17.54■□□□□ 0.4
CLK3-223ENST00000568488 NLRP12P59046 1061 aa17.54■□□□□ 0.4
CLK3-223ENST00000568488 FAM193AP78312 1265 aa17.54■□□□□ 0.4
CLK3-223ENST00000568488 STRN3Q13033 797 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms