RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 DDX43Q9NXZ2 648 aaKnown RBP19.76■□□□□ 0.75
CLN3-221ENST00000566057 HCRTO43612 131 aa19.75■□□□□ 0.75
CLN3-221ENST00000566057 EXOC3O60645 756 aa19.75■□□□□ 0.75
CLN3-221ENST00000566057 ATF6P18850 670 aa19.75■□□□□ 0.75
CLN3-221ENST00000566057 TNNI1P19237 187 aa19.75■□□□□ 0.75
CLN3-221ENST00000566057 FCARP24071 287 aa19.75■□□□□ 0.75
CLN3-221ENST00000566057 ACAT1P24752 427 aaKnown RBP19.75■□□□□ 0.75
CLN3-221ENST00000566057 TUFMP49411 452 aaKnown RBP19.75■□□□□ 0.75
CLN3-221ENST00000566057 NHLH1Q02575 133 aa19.75■□□□□ 0.75
CLN3-221ENST00000566057 DPYDQ12882 1025 aa19.75■□□□□ 0.75
CLN3-221ENST00000566057 LIMS2Q7Z4I7 341 aa19.75■□□□□ 0.75
CLN3-221ENST00000566057 TMEM86AQ8N2M4 240 aa19.75■□□□□ 0.75
CLN3-221ENST00000566057 LEMD2Q8NC56 503 aa19.75■□□□□ 0.75
CLN3-221ENST00000566057 PSMG2Q969U7 264 aa19.75■□□□□ 0.75
CLN3-221ENST00000566057 FNBP1Q96RU3 617 aa19.75■□□□□ 0.75
CLN3-221ENST00000566057 CGRRF1Q99675 332 aa19.75■□□□□ 0.75
CLN3-221ENST00000566057 SEPT5Q99719 369 aaPredicted RBP19.75■□□□□ 0.75
CLN3-221ENST00000566057 LPIN3Q9BQK8 851 aa19.75■□□□□ 0.75
CLN3-221ENST00000566057 ZNF334Q9HCZ1 680 aaPredicted RBP19.75■□□□□ 0.75
CLN3-221ENST00000566057 DMAC2Q9NW81 257 aa19.75■□□□□ 0.75
CLN3-221ENST00000566057 ZNF638Q14966 1978 aaKnown RBP19.75■□□□□ 0.75
CLN3-221ENST00000566057 OBSL1O75147 1896 aa19.75■□□□□ 0.75
CLN3-221ENST00000566057 GABRDO14764 452 aa19.74■□□□□ 0.75
CLN3-221ENST00000566057 ECI2O75521 394 aa19.74■□□□□ 0.75
CLN3-221ENST00000566057 HAPLN1P10915 354 aaPredicted RBP19.74■□□□□ 0.75
CLN3-221ENST00000566057 CASP4P49662 377 aa19.74■□□□□ 0.75
CLN3-221ENST00000566057 NUCB2P80303 420 aa19.74■□□□□ 0.75
CLN3-221ENST00000566057 MYO1EQ12965 1108 aa19.74■□□□□ 0.75
CLN3-221ENST00000566057 TEAD2Q15562 447 aa19.74■□□□□ 0.75
CLN3-221ENST00000566057 MGAT5BQ3V5L5 792 aa19.74■□□□□ 0.75
CLN3-221ENST00000566057 DCP1BQ8IZD4 617 aaKnown RBP19.74■□□□□ 0.75
CLN3-221ENST00000566057 ADGRF2Q8IZF7 708 aa19.74■□□□□ 0.75
CLN3-221ENST00000566057 TOP6BLQ8N6T0 577 aa19.74■□□□□ 0.75
CLN3-221ENST00000566057 GOLGA5Q8TBA6 731 aa19.74■□□□□ 0.75
CLN3-221ENST00000566057 C2orf15Q8WU43 125 aaKnown RBP19.74■□□□□ 0.75
CLN3-221ENST00000566057 ASB16Q96NS5 453 aa19.74■□□□□ 0.75
CLN3-221ENST00000566057 PKMYT1Q99640 499 aa19.74■□□□□ 0.75
CLN3-221ENST00000566057 ACBD6Q9BR61 282 aa19.74■□□□□ 0.75
CLN3-221ENST00000566057 ABI2Q9NYB9 513 aaPredicted RBP19.74■□□□□ 0.75
CLN3-221ENST00000566057 R3HCC1Q9Y3T6 440 aaKnown RBP19.74■□□□□ 0.75
CLN3-221ENST00000566057 ASB3Q9Y575 518 aa19.74■□□□□ 0.75
CLN3-221ENST00000566057 PTPRDP23468 1912 aa19.74■□□□□ 0.75
CLN3-221ENST00000566057 GREB1Q4ZG55 1949 aa19.74■□□□□ 0.75
CLN3-221ENST00000566057 MIA3Q5JRA6 1907 aa19.74■□□□□ 0.75
CLN3-221ENST00000566057 NUP210Q8TEM1 1887 aaPredicted RBP19.73■□□□□ 0.75
CLN3-221ENST00000566057 A0A1W2PRU2 124 aa19.73■□□□□ 0.75
CLN3-221ENST00000566057 RHOBTB3O94955 611 aa19.73■□□□□ 0.75
CLN3-221ENST00000566057 AOC1P19801 751 aa19.73■□□□□ 0.75
CLN3-221ENST00000566057 MYL7Q01449 175 aa19.73■□□□□ 0.75
CLN3-221ENST00000566057 TSPY1Q01534 308 aa19.73■□□□□ 0.75
CLN3-221ENST00000566057 SMARCB1Q12824 385 aa19.73■□□□□ 0.75
CLN3-221ENST00000566057 CCDC142Q17RM4 750 aa19.73■□□□□ 0.75
CLN3-221ENST00000566057 GAREM2Q75VX8 874 aa19.73■□□□□ 0.75
CLN3-221ENST00000566057 SLC9A9Q8IVB4 645 aa19.73■□□□□ 0.75
CLN3-221ENST00000566057 SPPL2BQ8TCT7 592 aa19.73■□□□□ 0.75
CLN3-221ENST00000566057 GIPC2Q8TF65 315 aa19.73■□□□□ 0.75
CLN3-221ENST00000566057 TMEM174Q8WUU8 243 aa19.73■□□□□ 0.75
CLN3-221ENST00000566057 KBTBD7Q8WVZ9 684 aa19.73■□□□□ 0.75
CLN3-221ENST00000566057 ELSPBP1Q96BH3 223 aa19.73■□□□□ 0.75
CLN3-221ENST00000566057 PI4K2AQ9BTU6 479 aa19.73■□□□□ 0.75
CLN3-221ENST00000566057 TBC1D17Q9HA65 648 aa19.73■□□□□ 0.75
CLN3-221ENST00000566057 ARHGEF3Q9NR81 526 aa19.73■□□□□ 0.75
CLN3-221ENST00000566057 TICRRQ7Z2Z1 1910 aa19.72■□□□□ 0.75
CLN3-221ENST00000566057 F5P12259 2224 aa19.72■□□□□ 0.75
CLN3-221ENST00000566057 WDR87Q6ZQQ6 2873 aa19.72■□□□□ 0.75
CLN3-221ENST00000566057 STK25O00506 426 aa19.72■□□□□ 0.75
CLN3-221ENST00000566057 PDXKO00764 312 aa19.72■□□□□ 0.75
CLN3-221ENST00000566057 PRPF40AO75400 957 aaKnown RBP19.72■□□□□ 0.75
CLN3-221ENST00000566057 LMO2P25791 158 aa19.72■□□□□ 0.75
CLN3-221ENST00000566057 SNW1Q13573 536 aaKnown RBP19.72■□□□□ 0.75
CLN3-221ENST00000566057 INTS6LQ5JSJ4 861 aaKnown RBP19.72■□□□□ 0.75
CLN3-221ENST00000566057 STXBP5Q5T5C0 1151 aa19.72■□□□□ 0.75
CLN3-221ENST00000566057 DPH6Q7L8W6 267 aa19.72■□□□□ 0.75
CLN3-221ENST00000566057 ZSCAN18Q8TBC5 510 aaPredicted RBP19.72■□□□□ 0.75
CLN3-221ENST00000566057 SPATA18Q8TC71 538 aa19.72■□□□□ 0.75
CLN3-221ENST00000566057 FAM200AQ8TCP9 573 aa19.72■□□□□ 0.75
CLN3-221ENST00000566057 SMARCD2Q92925 531 aa19.72■□□□□ 0.75
CLN3-221ENST00000566057 PRRX2Q99811 253 aa19.72■□□□□ 0.75
CLN3-221ENST00000566057 ZFP14Q9HCL3 533 aa19.72■□□□□ 0.75
CLN3-221ENST00000566057 GTF3C4Q9UKN8 822 aa19.72■□□□□ 0.75
CLN3-221ENST00000566057 PCDHB5Q9Y5E4 795 aa19.72■□□□□ 0.75
CLN3-221ENST00000566057 GALR2O43603 387 aaPredicted RBP19.71■□□□□ 0.75
CLN3-221ENST00000566057 ATP2C2O75185 946 aa19.71■□□□□ 0.75
CLN3-221ENST00000566057 NR3C1P04150 777 aa19.71■□□□□ 0.75
CLN3-221ENST00000566057 VIPR2P41587 438 aa19.71■□□□□ 0.75
CLN3-221ENST00000566057 LHX1P48742 406 aa19.71■□□□□ 0.75
CLN3-221ENST00000566057 GPR15P49685 360 aa19.71■□□□□ 0.75
CLN3-221ENST00000566057 PTPN5P54829 565 aa19.71■□□□□ 0.75
CLN3-221ENST00000566057 ITIH5Q86UX2 942 aa19.71■□□□□ 0.75
CLN3-221ENST00000566057 GPIHBP1Q8IV16 184 aa19.71■□□□□ 0.75
CLN3-221ENST00000566057 FMR1NBQ8N0W7 255 aaPredicted RBP19.71■□□□□ 0.75
CLN3-221ENST00000566057 PARD3BQ8TEW8 1205 aa19.71■□□□□ 0.75
CLN3-221ENST00000566057 MKNK1Q9BUB5 465 aa19.71■□□□□ 0.75
CLN3-221ENST00000566057 TRPV4Q9HBA0 871 aa19.71■□□□□ 0.75
CLN3-221ENST00000566057 MAPK8IP1Q9UQF2 711 aa19.71■□□□□ 0.75
CLN3-221ENST00000566057 MYO15AQ9UKN7 3530 aa19.71■□□□□ 0.75
CLN3-221ENST00000566057 NCANO14594 1321 aa19.71■□□□□ 0.75
CLN3-221ENST00000566057 CACNA1IQ9P0X4 2223 aa19.71■□□□□ 0.75
CLN3-221ENST00000566057 ANAPC1Q9H1A4 1944 aa19.7■□□□□ 0.74
CLN3-221ENST00000566057 DMDP11532 3685 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms