RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 TAF3Q5VWG9 929 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 SPOPLQ6IQ16 392 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 ACAD10Q6JQN1 1059 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 TMEM270Q6UE05 265 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 EP400NLQ6ZTU2 488 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 CTAGE6Q86UF2 777 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 RTN4RL1Q86UN2 441 aaPredicted RBP9.52□□□□□ -0.89
VPS39-207ENST00000563692 FAM228AQ86W67 206 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 CTAGE4Q8IX94 777 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 EFCAB13Q8IY85 973 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 CEP120Q8N960 986 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 RBBP8NLQ8NC74 664 aaPredicted RBP9.52□□□□□ -0.89
VPS39-207ENST00000563692 BEST2Q8NFU1 509 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 SLC20A1Q8WUM9 679 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 GOLGA1Q92805 767 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 TTC28Q96AY4 2481 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 KIF12Q96FN5 646 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 PACSIN1Q9BY11 444 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 CYP3A43Q9HB55 503 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 RC3H2Q9HBD1 1191 aaKnown RBP9.52□□□□□ -0.89
VPS39-207ENST00000563692 APOBEC3GQ9HC16 384 aaKnown RBP9.52□□□□□ -0.89
VPS39-207ENST00000563692 CHST12Q9NRB3 414 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 RGS18Q9NS28 235 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 DPP3Q9NY33 737 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 SNX12Q9UMY4 172 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 PIN4Q9Y237 131 aaKnown RBP9.52□□□□□ -0.89
VPS39-207ENST00000563692 HYOU1Q9Y4L1 999 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 PCDHB12Q9Y5F1 795 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 PCDHGC5Q9Y5F6 944 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 CHD7Q9P2D1 2997 aa9.52□□□□□ -0.89
VPS39-207ENST00000563692 COL4A6Q14031 1691 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 MED7O43513 233 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 STAU1O95793 577 aaKnown RBP9.51□□□□□ -0.89
VPS39-207ENST00000563692 ITGB3P05106 788 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 MMEP08473 750 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 NFICP08651 508 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 MYBL1P10243 752 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 CHRNB2P17787 502 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 ABCB4P21439 1286 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 KCNA5P22460 613 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 GNA15P30679 374 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 AMPD2Q01433 879 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 FMO1Q01740 532 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 RPS6KA1Q15418 735 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 CLEC16AQ2KHT3 1053 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 WDR72Q3MJ13 1102 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 MEI1Q5TIA1 1274 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 CCDC181Q5TID7 509 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 LIN9Q5TKA1 542 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 RNF169Q8NCN4 708 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 TPCN2Q8NHX9 752 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 SLC35G2Q8TBE7 412 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 RFFLQ8WZ73 363 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 HPDLQ96IR7 371 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 SELENOOQ9BVL4 669 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 ELAC1Q9H777 363 aaKnown RBP9.51□□□□□ -0.89
VPS39-207ENST00000563692 UBE2ZQ9H832 354 aaPredicted RBP9.51□□□□□ -0.89
VPS39-207ENST00000563692 VRTNQ9H8Y1 702 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 CISHQ9NSE2 258 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 TMEM161AQ9NX61 479 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 SNTG2Q9NY99 539 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 CTTNBP2NLQ9P2B4 639 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 NXF1Q9UBU9 619 aaKnown RBP9.51□□□□□ -0.89
VPS39-207ENST00000563692 PARP2Q9UGN5 583 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 PUF60Q9UHX1 559 aaKnown RBP9.51□□□□□ -0.89
VPS39-207ENST00000563692 SALL4Q9UJQ4 1053 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 AMFRQ9UKV5 643 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 AGAP1Q9UPQ3 857 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 FAM50BQ9Y247 325 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.51□□□□□ -0.89
VPS39-207ENST00000563692 MRPL42Q9Y6G3 142 aaKnown RBP9.51□□□□□ -0.89
VPS39-207ENST00000563692 CAPN6Q9Y6Q1 641 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 TTC3P53804 2025 aa9.51□□□□□ -0.89
VPS39-207ENST00000563692 C9IYK1 514 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 GRM6O15303 877 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 THAP12O43422 761 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 MGEA5O60502 916 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 CSPG5O95196 566 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 TUBBP07437 444 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 PAEPP09466 180 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 SKIP12755 728 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 BMP1P13497 986 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 NSFP46459 744 aaKnown RBP9.5□□□□□ -0.89
VPS39-207ENST00000563692 KCNQ1P51787 676 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 HADHBP55084 474 aaKnown RBP9.5□□□□□ -0.89
VPS39-207ENST00000563692 TNNC1P63316 161 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 PUS10Q3MIT2 529 aaKnown RBP9.5□□□□□ -0.89
VPS39-207ENST00000563692 CFAP221Q4G0U5 840 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 TCEAL5Q5H9L2 206 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 TWF2Q6IBS0 349 aaKnown RBP9.5□□□□□ -0.89
VPS39-207ENST00000563692 CCDC70Q6NSX1 233 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 PEX26Q7Z412 305 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 DAAM2Q86T65 1068 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 C1orf127Q8N9H9 656 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 DDX1Q92499 740 aaKnown RBP9.5□□□□□ -0.89
VPS39-207ENST00000563692 VCPIP1Q96JH7 1222 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 PBKQ96KB5 322 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 OSBPL9Q96SU4 736 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 PCDHB18PQ96TA0 734 aa9.5□□□□□ -0.89
VPS39-207ENST00000563692 ARID3AQ99856 593 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms