RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 FUT8Q9BYC5 575 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 FAM49AQ9H0Q0 323 aaPredicted RBP7.96□□□□□ -1.14
VPS39-204ENST00000561818 STMN4Q9H169 189 aaPredicted RBP7.96□□□□□ -1.14
VPS39-204ENST00000561818 LRRC19Q9H756 370 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 MINDY3Q9H8M7 445 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 RBM12Q9NTZ6 932 aaKnown RBP7.96□□□□□ -1.14
VPS39-204ENST00000561818 ASNSD1Q9NWL6 643 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 NXF1Q9UBU9 619 aaKnown RBP7.96□□□□□ -1.14
VPS39-204ENST00000561818 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.96□□□□□ -1.14
VPS39-204ENST00000561818 AGAP1Q9UPQ3 857 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 NOD1Q9Y239 953 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 MYH10P35580 1976 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 PTPRJQ12913 1337 aa7.96□□□□□ -1.14
VPS39-204ENST00000561818 GOLGA6BA6NDN3 693 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 SIGLEC16A6NMB1 481 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 GOLGA8KD6RF30 607 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 FSCN2O14926 492 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 ZNF185O15231 689 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 HUS1O60921 280 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 ZNF623O75123 536 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 RPS6KA5O75582 802 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 RECQL4O94761 1208 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 ECEL1O95672 775 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 CST3P01034 146 aaPredicted RBP7.95□□□□□ -1.14
VPS39-204ENST00000561818 EDN1P05305 212 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 KRT3P12035 628 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 RRM1P23921 792 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 HOXA11P31270 313 aaPredicted RBP7.95□□□□□ -1.14
VPS39-204ENST00000561818 CXCR5P32302 372 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 LHX1P48742 406 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 FLT3LGP49771 235 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 PEX5P50542 639 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 SMC1AQ14683 1233 aaKnown RBP7.95□□□□□ -1.14
VPS39-204ENST00000561818 DEFB115Q30KQ5 88 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 GJC2Q5T442 439 aaPredicted RBP7.95□□□□□ -1.14
VPS39-204ENST00000561818 LMBRD2Q68DH5 695 aaPredicted RBP7.95□□□□□ -1.14
VPS39-204ENST00000561818 TWF2Q6IBS0 349 aaKnown RBP7.95□□□□□ -1.14
VPS39-204ENST00000561818 LRIG3Q6UXM1 1119 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 C4orf22Q6V702 233 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 RUFY4Q6ZNE9 571 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 SLC13A5Q86YT5 568 aaPredicted RBP7.95□□□□□ -1.14
VPS39-204ENST00000561818 PSTKQ8IV42 348 aaKnown RBP7.95□□□□□ -1.14
VPS39-204ENST00000561818 ZSWIM2Q8NEG5 633 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 APPL2Q8NEU8 664 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 AENQ8WTP8 325 aaKnown RBP7.95□□□□□ -1.14
VPS39-204ENST00000561818 DNAJB3Q8WWF6 145 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 HAUS1Q96CS2 278 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 ARHGEF26Q96DR7 871 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 CYFIP2Q96F07 1278 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 HSFY1Q96LI6 401 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 PCDHB18PQ96TA0 734 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 PSMB7Q99436 277 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 KRT12Q99456 494 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 ARID3AQ99856 593 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 FERMT1Q9BQL6 677 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 C11orf70Q9BRQ4 267 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 OXCT2Q9BYC2 517 aaPredicted RBP7.95□□□□□ -1.14
VPS39-204ENST00000561818 PHACTR1Q9C0D0 580 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 SNX25Q9H3E2 840 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 PPCSQ9HAB8 311 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 FAM53CQ9NYF3 392 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 RRN3Q9NYV6 651 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 TAS2R14Q9NYV8 317 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 SRRDQ9UH36 339 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 SIX4Q9UIU6 781 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 TFR2Q9UP52 801 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 MGAMO43451 1857 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 SCN10AQ9Y5Y9 1956 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 CITO14578 2027 aa7.95□□□□□ -1.14
VPS39-204ENST00000561818 TMEM191CA6NGB0 347 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 KPNA7A9QM74 516 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 O00370 1275 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 PDE2AO00408 941 aaPredicted RBP7.94□□□□□ -1.14
VPS39-204ENST00000561818 NCK2O43639 380 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 FBXO21O94952 628 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 TBC1D8O95759 1140 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 GLI1P08151 1106 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 IQCF3P0C7M6 154 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 ITGA4P13612 1032 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 ZFXP17010 805 aaPredicted RBP7.94□□□□□ -1.14
VPS39-204ENST00000561818 CD58P19256 250 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 PCSK1P29120 753 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 ATP5DP30049 168 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 RAD23BP54727 409 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 AIF1P55008 147 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 OSTNP61366 133 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 GUCY2DQ02846 1103 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 BST2Q10589 180 aaKnown RBP7.94□□□□□ -1.14
VPS39-204ENST00000561818 MTA1Q13330 715 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 HLTFQ14527 1009 aaKnown RBP eCLIP7.94□□□□□ -1.14
VPS39-204ENST00000561818 CCNG2Q16589 344 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 TFDP3Q5H9I0 405 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 FAM47CQ5HY64 1035 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 FAM26DQ5JW98 314 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 C9orf57Q5W0N0 161 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 SPOPLQ6IQ16 392 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 MMS22LQ6ZRQ5 1243 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 BZW1Q7L1Q6 419 aaKnown RBP7.94□□□□□ -1.14
VPS39-204ENST00000561818 PCGF5Q86SE9 256 aa7.94□□□□□ -1.14
VPS39-204ENST00000561818 HOOK3Q86VS8 718 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms