RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 SCN1AP35498 2009 aa17.77■□□□□ 0.43
CLN3-208ENST00000561505 K7ENM7 598 aa17.76■□□□□ 0.43
CLN3-208ENST00000561505 FAM13AO94988 1023 aa17.76■□□□□ 0.43
CLN3-208ENST00000561505 LONP1P36776 959 aaKnown RBP17.76■□□□□ 0.43
CLN3-208ENST00000561505 UBA7P41226 1012 aa17.76■□□□□ 0.43
CLN3-208ENST00000561505 RAP1GAPP47736 663 aa17.76■□□□□ 0.43
CLN3-208ENST00000561505 TNK2Q07912 1038 aa17.76■□□□□ 0.43
CLN3-208ENST00000561505 SRSF5Q13243 272 aaKnown RBP17.76■□□□□ 0.43
CLN3-208ENST00000561505 PON2Q15165 354 aa17.76■□□□□ 0.43
CLN3-208ENST00000561505 RABEP1Q15276 862 aa17.76■□□□□ 0.43
CLN3-208ENST00000561505 SLC39A12Q504Y0 691 aa17.76■□□□□ 0.43
CLN3-208ENST00000561505 MCTP1Q6DN14 999 aa17.76■□□□□ 0.43
CLN3-208ENST00000561505 SLFN12LQ6IEE8 588 aa17.76■□□□□ 0.43
CLN3-208ENST00000561505 PRR23BQ6ZRT6 265 aa17.76■□□□□ 0.43
CLN3-208ENST00000561505 GPIHBP1Q8IV16 184 aa17.76■□□□□ 0.43
CLN3-208ENST00000561505 FAM160A2Q8N612 972 aaPredicted RBP17.76■□□□□ 0.43
CLN3-208ENST00000561505 RAD54LQ92698 747 aa17.76■□□□□ 0.43
CLN3-208ENST00000561505 CALML4Q96GE6 196 aa17.76■□□□□ 0.43
CLN3-208ENST00000561505 TMX3Q96JJ7 454 aa17.76■□□□□ 0.43
CLN3-208ENST00000561505 HPS4Q9NQG7 708 aa17.76■□□□□ 0.43
CLN3-208ENST00000561505 DPP3Q9NY33 737 aa17.76■□□□□ 0.43
CLN3-208ENST00000561505 CYB561D2O14569 222 aa17.75■□□□□ 0.43
CLN3-208ENST00000561505 BMP15O95972 392 aa17.75■□□□□ 0.43
CLN3-208ENST00000561505 PLCG1P19174 1290 aa17.75■□□□□ 0.43
CLN3-208ENST00000561505 DDX6P26196 483 aaKnown RBP eCLIP17.75■□□□□ 0.43
CLN3-208ENST00000561505 NMT1P30419 496 aaKnown RBP17.75■□□□□ 0.43
CLN3-208ENST00000561505 ADSSP30520 456 aa17.75■□□□□ 0.43
CLN3-208ENST00000561505 HOXC13P31276 330 aa17.75■□□□□ 0.43
CLN3-208ENST00000561505 DDIT3P35638 169 aa17.75■□□□□ 0.43
CLN3-208ENST00000561505 ACOT2P49753 483 aa17.75■□□□□ 0.43
CLN3-208ENST00000561505 TAF6P49848 677 aa17.75■□□□□ 0.43
CLN3-208ENST00000561505 NLRP12P59046 1061 aa17.75■□□□□ 0.43
CLN3-208ENST00000561505 CYP4F8P98187 520 aa17.75■□□□□ 0.43
CLN3-208ENST00000561505 MCM6Q14566 821 aa17.75■□□□□ 0.43
CLN3-208ENST00000561505 VEPH1Q14D04 833 aa17.75■□□□□ 0.43
CLN3-208ENST00000561505 PTPAQ15257 358 aa17.75■□□□□ 0.43
CLN3-208ENST00000561505 ZNF720Q7Z2F6 126 aa17.75■□□□□ 0.43
CLN3-208ENST00000561505 LEO1Q8WVC0 666 aaPredicted RBP17.75■□□□□ 0.43
CLN3-208ENST00000561505 HVCN1Q96D96 273 aa17.75■□□□□ 0.43
CLN3-208ENST00000561505 GKN1Q9NS71 199 aa17.75■□□□□ 0.43
CLN3-208ENST00000561505 THG1LQ9NWX6 298 aaKnown RBP17.75■□□□□ 0.43
CLN3-208ENST00000561505 DENND4CQ5VZ89 1909 aa17.74■□□□□ 0.43
CLN3-208ENST00000561505 CHD8Q9HCK8 2581 aa17.74■□□□□ 0.43
CLN3-208ENST00000561505 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.74■□□□□ 0.43
CLN3-208ENST00000561505 OTOL1A6NHN0 477 aaPredicted RBP17.74■□□□□ 0.43
CLN3-208ENST00000561505 KPNA7A9QM74 516 aa17.74■□□□□ 0.43
CLN3-208ENST00000561505 TISP43B9A030 160 aa17.74■□□□□ 0.43
CLN3-208ENST00000561505 AKAP3O75969 853 aa17.74■□□□□ 0.43
CLN3-208ENST00000561505 GJB2P29033 226 aa17.74■□□□□ 0.43
CLN3-208ENST00000561505 GRIN1Q05586 938 aa17.74■□□□□ 0.43
CLN3-208ENST00000561505 RUNX3Q13761 415 aa17.74■□□□□ 0.43
CLN3-208ENST00000561505 ZNF268Q14587 947 aaPredicted RBP17.74■□□□□ 0.43
CLN3-208ENST00000561505 MGAT5BQ3V5L5 792 aa17.74■□□□□ 0.43
CLN3-208ENST00000561505 ZC2HC1CQ53FD0 456 aaPredicted RBP17.74■□□□□ 0.43
CLN3-208ENST00000561505 WSCD1Q658N2 575 aa17.74■□□□□ 0.43
CLN3-208ENST00000561505 FSTL4Q6MZW2 842 aa17.74■□□□□ 0.43
CLN3-208ENST00000561505 PKN3Q6P5Z2 889 aa17.74■□□□□ 0.43
CLN3-208ENST00000561505 EFCAB13Q8IY85 973 aa17.74■□□□□ 0.43
CLN3-208ENST00000561505 THEM5Q8N1Q8 247 aa17.74■□□□□ 0.43
CLN3-208ENST00000561505 CXorf38Q8TB03 319 aa17.74■□□□□ 0.43
CLN3-208ENST00000561505 GAB3Q8WWW8 586 aa17.74■□□□□ 0.43
CLN3-208ENST00000561505 LARP4BQ92615 738 aaKnown RBP17.74■□□□□ 0.43
CLN3-208ENST00000561505 USP13Q92995 863 aaPredicted RBP17.74■□□□□ 0.43
CLN3-208ENST00000561505 ZC3H10Q96K80 434 aaKnown RBP17.74■□□□□ 0.43
CLN3-208ENST00000561505 MYRFLQ96LU7 910 aa17.74■□□□□ 0.43
CLN3-208ENST00000561505 SEPT5Q99719 369 aaPredicted RBP17.74■□□□□ 0.43
CLN3-208ENST00000561505 KIF9Q9HAQ2 790 aa17.74■□□□□ 0.43
CLN3-208ENST00000561505 AGO2Q9UKV8 859 aaKnown RBP17.74■□□□□ 0.43
CLN3-208ENST00000561505 EXTL3O43909 919 aa17.73■□□□□ 0.43
CLN3-208ENST00000561505 GDF9O60383 454 aa17.73■□□□□ 0.43
CLN3-208ENST00000561505 ZNF806P0C7X5 589 aa17.73■□□□□ 0.43
CLN3-208ENST00000561505 KARSQ15046 597 aaKnown RBP17.73■□□□□ 0.43
CLN3-208ENST00000561505 PPM1JQ5JR12 505 aa17.73■□□□□ 0.43
CLN3-208ENST00000561505 PLA2G2CQ5R387 149 aa17.73■□□□□ 0.43
CLN3-208ENST00000561505 ADALQ6DHV7 355 aa17.73■□□□□ 0.43
CLN3-208ENST00000561505 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.73■□□□□ 0.43
CLN3-208ENST00000561505 MON1AQ86VX9 555 aa17.73■□□□□ 0.43
CLN3-208ENST00000561505 METTL23Q86XA0 190 aa17.73■□□□□ 0.43
CLN3-208ENST00000561505 DCP1BQ8IZD4 617 aaKnown RBP17.73■□□□□ 0.43
CLN3-208ENST00000561505 CAMKK1Q8N5S9 505 aa17.73■□□□□ 0.43
CLN3-208ENST00000561505 TTC8Q8TAM2 541 aa17.73■□□□□ 0.43
CLN3-208ENST00000561505 RIN3Q8TB24 985 aa17.73■□□□□ 0.43
CLN3-208ENST00000561505 DDX1Q92499 740 aaKnown RBP17.73■□□□□ 0.43
CLN3-208ENST00000561505 FAM212AQ96EL1 285 aa17.73■□□□□ 0.43
CLN3-208ENST00000561505 PKMYT1Q99640 499 aa17.73■□□□□ 0.43
CLN3-208ENST00000561505 PYM1Q9BRP8 204 aaKnown RBP17.73■□□□□ 0.43
CLN3-208ENST00000561505 ABCB6Q9NP58 842 aa17.73■□□□□ 0.43
CLN3-208ENST00000561505 TMLHEQ9NVH6 421 aa17.73■□□□□ 0.43
CLN3-208ENST00000561505 CCL26Q9Y258 94 aa17.73■□□□□ 0.43
CLN3-208ENST00000561505 ATG13O75143 517 aa17.72■□□□□ 0.43
CLN3-208ENST00000561505 EPN2O95208 641 aa17.72■□□□□ 0.43
CLN3-208ENST00000561505 IL18RAPO95256 599 aa17.72■□□□□ 0.43
CLN3-208ENST00000561505 CD2BP2O95400 341 aaKnown RBP17.72■□□□□ 0.43
CLN3-208ENST00000561505 POSTNQ15063 836 aa17.72■□□□□ 0.43
CLN3-208ENST00000561505 HEATR6Q6AI08 1181 aaKnown RBP17.72■□□□□ 0.43
CLN3-208ENST00000561505 SPATA18Q8TC71 538 aa17.72■□□□□ 0.43
CLN3-208ENST00000561505 FAM200AQ8TCP9 573 aa17.72■□□□□ 0.43
CLN3-208ENST00000561505 GIPC2Q8TF65 315 aa17.72■□□□□ 0.43
CLN3-208ENST00000561505 TRMT2BQ96GJ1 504 aaKnown RBP17.72■□□□□ 0.43
CLN3-208ENST00000561505 TDP1Q9NUW8 608 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms