RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 PAX3P23760 479 aa19.32■□□□□ 0.68
TSPAN3-208ENST00000560514 DDX6P26196 483 aaKnown RBP eCLIP19.32■□□□□ 0.68
TSPAN3-208ENST00000560514 GALK1P51570 392 aa19.32■□□□□ 0.68
TSPAN3-208ENST00000560514 DGKEP52429 567 aa19.32■□□□□ 0.68
TSPAN3-208ENST00000560514 GNL2Q13823 731 aaKnown RBP19.32■□□□□ 0.68
TSPAN3-208ENST00000560514 ME3Q16798 604 aa19.32■□□□□ 0.68
TSPAN3-208ENST00000560514 SLC39A12Q504Y0 691 aa19.32■□□□□ 0.68
TSPAN3-208ENST00000560514 KRT79Q5XKE5 535 aa19.32■□□□□ 0.68
TSPAN3-208ENST00000560514 SYT13Q7L8C5 426 aa19.32■□□□□ 0.68
TSPAN3-208ENST00000560514 MAB21L3Q8N8X9 362 aa19.32■□□□□ 0.68
TSPAN3-208ENST00000560514 SENP8Q96LD8 212 aa19.32■□□□□ 0.68
TSPAN3-208ENST00000560514 RUSC1Q9BVN2 902 aa19.32■□□□□ 0.68
TSPAN3-208ENST00000560514 TIPINQ9BVW5 301 aa19.32■□□□□ 0.68
TSPAN3-208ENST00000560514 KIF9Q9HAQ2 790 aa19.32■□□□□ 0.68
TSPAN3-208ENST00000560514 POLR3BQ9NW08 1133 aaPredicted RBP19.32■□□□□ 0.68
TSPAN3-208ENST00000560514 PPP4R2Q9NY27 417 aa19.32■□□□□ 0.68
TSPAN3-208ENST00000560514 EBF1Q9UH73 591 aa19.32■□□□□ 0.68
TSPAN3-208ENST00000560514 THADAQ6YHU6 1953 aa19.32■□□□□ 0.68
TSPAN3-208ENST00000560514 TTC26A0AVF1 554 aa19.31■□□□□ 0.68
TSPAN3-208ENST00000560514 CSRP1P21291 193 aaKnown RBP19.31■□□□□ 0.68
TSPAN3-208ENST00000560514 ANAPC15P60006 121 aa19.31■□□□□ 0.68
TSPAN3-208ENST00000560514 MCL1Q07820 350 aa19.31■□□□□ 0.68
TSPAN3-208ENST00000560514 PDIA5Q14554 519 aa19.31■□□□□ 0.68
TSPAN3-208ENST00000560514 DMC1Q14565 340 aa19.31■□□□□ 0.68
TSPAN3-208ENST00000560514 PDGFRLQ15198 375 aa19.31■□□□□ 0.68
TSPAN3-208ENST00000560514 KYAT1Q16773 422 aa19.31■□□□□ 0.68
TSPAN3-208ENST00000560514 UAP1L1Q3KQV9 507 aa19.31■□□□□ 0.68
TSPAN3-208ENST00000560514 USP39Q53GS9 565 aaKnown RBP19.31■□□□□ 0.68
TSPAN3-208ENST00000560514 RINT1Q6NUQ1 792 aa19.31■□□□□ 0.68
TSPAN3-208ENST00000560514 METTL23Q86XA0 190 aa19.31■□□□□ 0.68
TSPAN3-208ENST00000560514 TMEM130Q8N3G9 435 aa19.31■□□□□ 0.68
TSPAN3-208ENST00000560514 CPA6Q8N4T0 437 aa19.31■□□□□ 0.68
TSPAN3-208ENST00000560514 CCDC26Q8TAB7 109 aa19.31■□□□□ 0.68
TSPAN3-208ENST00000560514 GIPC2Q8TF65 315 aa19.31■□□□□ 0.68
TSPAN3-208ENST00000560514 ZCCHC14Q8WYQ9 949 aaKnown RBP19.31■□□□□ 0.68
TSPAN3-208ENST00000560514 SCNM1Q9BWG6 230 aa19.31■□□□□ 0.68
TSPAN3-208ENST00000560514 IL21Q9HBE4 155 aa19.31■□□□□ 0.68
TSPAN3-208ENST00000560514 TDP1Q9NUW8 608 aa19.31■□□□□ 0.68
TSPAN3-208ENST00000560514 NOL7Q9UMY1 257 aaKnown RBP19.31■□□□□ 0.68
TSPAN3-208ENST00000560514 DENND4CQ5VZ89 1909 aa19.3■□□□□ 0.68
TSPAN3-208ENST00000560514 SRRM3A6NNA2 597 aaPredicted RBP19.3■□□□□ 0.68
TSPAN3-208ENST00000560514 ATF6P18850 670 aa19.3■□□□□ 0.68
TSPAN3-208ENST00000560514 GUCY2FP51841 1108 aa19.3■□□□□ 0.68
TSPAN3-208ENST00000560514 LILRA4P59901 499 aa19.3■□□□□ 0.68
TSPAN3-208ENST00000560514 ZBTB6Q15916 424 aa19.3■□□□□ 0.68
TSPAN3-208ENST00000560514 CYP2U1Q7Z449 544 aa19.3■□□□□ 0.68
TSPAN3-208ENST00000560514 THEM5Q8N1Q8 247 aa19.3■□□□□ 0.68
TSPAN3-208ENST00000560514 TSTD1Q8NFU3 115 aa19.3■□□□□ 0.68
TSPAN3-208ENST00000560514 C2orf15Q8WU43 125 aaKnown RBP19.3■□□□□ 0.68
TSPAN3-208ENST00000560514 SPIRE2Q8WWL2 714 aa19.3■□□□□ 0.68
TSPAN3-208ENST00000560514 MRPS31Q92665 395 aaKnown RBP19.3■□□□□ 0.68
TSPAN3-208ENST00000560514 FAM212AQ96EL1 285 aa19.3■□□□□ 0.68
TSPAN3-208ENST00000560514 TSPAN18Q96SJ8 248 aa19.3■□□□□ 0.68
TSPAN3-208ENST00000560514 NTPCRQ9BSD7 190 aaKnown RBP19.3■□□□□ 0.68
TSPAN3-208ENST00000560514 RPF1Q9H9Y2 349 aaKnown RBP19.3■□□□□ 0.68
TSPAN3-208ENST00000560514 DSEQ9UL01 958 aa19.3■□□□□ 0.68
TSPAN3-208ENST00000560514 IGF2RP11717 2491 aa19.3■□□□□ 0.68
TSPAN3-208ENST00000560514 ABCA7Q8IZY2 2146 aa19.3■□□□□ 0.68
TSPAN3-208ENST00000560514 ANK1P16157 1881 aa19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 OTOL1A6NHN0 477 aaPredicted RBP19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 LACTBL1A8MY62 500 aa19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 PLS3P13797 630 aa19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 ARSAP15289 507 aa19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 U2AF2P26368 475 aaKnown RBP eCLIP19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 CDR1P51861 262 aa19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 SMARCB1Q12824 385 aa19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 MAPK7Q13164 816 aa19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 C1orf186Q6ZWK4 172 aa19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 TMEM161BQ8NDZ6 487 aa19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 TTC16Q8NEE8 873 aa19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 OR10T2Q8NGX3 314 aa19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 SPPL2BQ8TCT7 592 aa19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 USP13Q92995 863 aaPredicted RBP19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 CHFRQ96EP1 664 aa19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 C8orf76Q96K31 380 aa19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 ZCWPW1Q9H0M4 648 aa19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 FOXP1Q9H334 677 aaPredicted RBP19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 SLC32A1Q9H598 525 aa19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 FBRSL1Q9HCM7 1045 aaKnown RBP19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 LHX6Q9UPM6 363 aa19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 CCL26Q9Y258 94 aa19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 INVSQ9Y283 1065 aa19.29■□□□□ 0.68
TSPAN3-208ENST00000560514 H0YCG3 227 aa19.28■□□□□ 0.68
TSPAN3-208ENST00000560514 TOP3BO95985 862 aaKnown RBP19.28■□□□□ 0.68
TSPAN3-208ENST00000560514 MAPTP10636 758 aaKnown RBP19.28■□□□□ 0.68
TSPAN3-208ENST00000560514 GJA4P35212 333 aa19.28■□□□□ 0.68
TSPAN3-208ENST00000560514 TNFSF9P41273 254 aa19.28■□□□□ 0.68
TSPAN3-208ENST00000560514 LIG4P49917 911 aa19.28■□□□□ 0.68
TSPAN3-208ENST00000560514 RAD51AP2Q09MP3 1159 aa19.28■□□□□ 0.68
TSPAN3-208ENST00000560514 PMS2CLQ68D20 193 aa19.28■□□□□ 0.68
TSPAN3-208ENST00000560514 GATA6Q92908 595 aa19.28■□□□□ 0.68
TSPAN3-208ENST00000560514 CD101Q93033 1021 aa19.28■□□□□ 0.68
TSPAN3-208ENST00000560514 TMEM121BQ9BXQ6 578 aaPredicted RBP19.28■□□□□ 0.68
TSPAN3-208ENST00000560514 ABI2Q9NYB9 513 aaPredicted RBP19.28■□□□□ 0.68
TSPAN3-208ENST00000560514 WASF3Q9UPY6 502 aa19.28■□□□□ 0.68
TSPAN3-208ENST00000560514 GUCY2CP25092 1073 aa19.27■□□□□ 0.68
TSPAN3-208ENST00000560514 NMT1P30419 496 aaKnown RBP19.27■□□□□ 0.68
TSPAN3-208ENST00000560514 IFNAR2P48551 515 aa19.27■□□□□ 0.68
TSPAN3-208ENST00000560514 TRAPPC10P48553 1259 aa19.27■□□□□ 0.68
TSPAN3-208ENST00000560514 DHPSP49366 369 aaPredicted RBP19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms