RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 PLEKHA4Q9H4M7 779 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 APOBEC3GQ9HC16 384 aaKnown RBP10.76□□□□□ -0.69
USP3-216ENST00000559873 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.76□□□□□ -0.692e-22■■■■■ 279.5
USP3-216ENST00000559873 AFF4Q9UHB7 1163 aaKnown RBP10.76□□□□□ -0.69
USP3-216ENST00000559873 BARX2Q9UMQ3 279 aaPredicted RBP10.76□□□□□ -0.69
USP3-216ENST00000559873 HCFC2Q9Y5Z7 792 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 SZT2Q5T011 3432 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 ATP8B3O60423 1300 aa10.76□□□□□ -0.69
USP3-216ENST00000559873 WDR27A2RRH5 827 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 PRRG1O14668 218 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 PER2O15055 1255 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 TGM5O43548 720 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 TBC1D4O60343 1298 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 WEE2P0C1S8 567 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 CD58P19256 250 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 RAP1GAPP47736 663 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 HYAL1Q12794 435 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 GPR17Q13304 367 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 SLC39A12Q504Y0 691 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 RTL10Q7L3V2 364 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 OSTM1Q86WC4 334 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 SPATA2LQ8IUW3 424 aaPredicted RBP10.75□□□□□ -0.69
USP3-216ENST00000559873 OR10T2Q8NGX3 314 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 MAFAQ8NHW3 353 aaPredicted RBP10.75□□□□□ -0.69
USP3-216ENST00000559873 ZNF461Q8TAF7 563 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 LMO3Q8TAP4 145 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 SPPL2BQ8TCT7 592 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 PABPC5Q96DU9 382 aaKnown RBP10.75□□□□□ -0.69
USP3-216ENST00000559873 FUBP3Q96I24 572 aaKnown RBP eCLIP10.75□□□□□ -0.69
USP3-216ENST00000559873 LSM14BQ9BX40 385 aaKnown RBP10.75□□□□□ -0.69
USP3-216ENST00000559873 ZCWPW1Q9H0M4 648 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 IGFLR1Q9H665 355 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 SFXN1Q9H9B4 322 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 CISHQ9NSE2 258 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 CLDND1Q9NY35 253 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 HSFX1Q9UBD0 423 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 FBXW11Q9UKB1 542 aa10.75□□□□□ -0.69
USP3-216ENST00000559873 A0A1B0GTH6 734 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 A0A1W2PQC6 194 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 CILPO75339 1184 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 ABLIM3O94929 683 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 ATF2P15336 505 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 HOXB8P17481 243 aaPredicted RBP10.74□□□□□ -0.69
USP3-216ENST00000559873 SLC9A1P19634 815 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 ACAT1P24752 427 aaKnown RBP10.74□□□□□ -0.69
USP3-216ENST00000559873 PON1P27169 355 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 NDST1P52848 882 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 FANCCQ00597 558 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 SYCP1Q15431 976 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 SCARA3Q6AZY7 606 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 LLGL2Q6P1M3 1020 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 EP400NLQ6ZTU2 488 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 PALB2Q86YC2 1186 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 FMNL3Q8IVF7 1028 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 TCEAL8Q8IYN2 117 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 ELMOD1Q8N336 334 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 B3GALNT2Q8NCR0 500 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 KREMEN2Q8NCW0 462 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 NEK11Q8NG66 645 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 TATDN2Q93075 761 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 ERGIC2Q96RQ1 377 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 RTP3Q9BQQ7 232 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 CYP4F11Q9HBI6 524 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 ABCB6Q9NP58 842 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 PLCB1Q9NQ66 1216 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 MAN1C1Q9NR34 630 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 ZDHHC7Q9NXF8 308 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 COG5Q9UP83 839 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 PCDHB5Q9Y5E4 795 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 ATG2AQ2TAZ0 1938 aa10.74□□□□□ -0.69
USP3-216ENST00000559873 TRANK1O15050 2925 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 MTMR11A4FU01 709 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 ADAM12O43184 909 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 LRRN2O75325 713 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 LRG1P02750 347 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 C8AP07357 584 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 PDGFRBP09619 1106 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 HNRNPA1P09651 372 aaKnown RBP eCLIP10.73□□□□□ -0.69
USP3-216ENST00000559873 OR4Q2P0C623 313 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 EPCAMP16422 314 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 PTPN1P18031 435 aaKnown RBP10.73□□□□□ -0.69
USP3-216ENST00000559873 HOXA9P31269 272 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 TUFMP49411 452 aaKnown RBP10.73□□□□□ -0.69
USP3-216ENST00000559873 CDH8P55286 799 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 UBASH3AP57075 661 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 PSMC1P62191 440 aaKnown RBP10.73□□□□□ -0.69
USP3-216ENST00000559873 ADCY1Q08828 1119 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 COL19A1Q14993 1142 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 CCDC85BQ15834 202 aaPredicted RBP10.73□□□□□ -0.69
USP3-216ENST00000559873 UVSSAQ2YD98 709 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 CFAP221Q4G0U5 840 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 MDH1BQ5I0G3 518 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 PPM1LQ5SGD2 360 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 PHLDB3Q6NSJ2 640 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 RSPO2Q6UXX9 243 aaPredicted RBP10.73□□□□□ -0.69
USP3-216ENST00000559873 TMEM184AQ6ZMB5 413 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 RRAGAQ7L523 313 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 APTXQ7Z2E3 356 aaKnown RBP10.73□□□□□ -0.69
USP3-216ENST00000559873 MYCBPAPQ8TBZ2 947 aa10.73□□□□□ -0.69
USP3-216ENST00000559873 SLC22A17Q8WUG5 538 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms