RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 CAV1Q03135 178 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 PTK7Q13308 1070 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 MOGSQ13724 837 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 UGCGQ16739 394 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 EML3Q32P44 896 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 MSS51Q4VC12 460 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 OLFML2BQ68BL8 750 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 PRPF39Q86UA1 669 aaKnown RBP11.91□□□□□ -0.5
LDLR-208ENST00000558518 RASSF3Q86WH2 238 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 PIP4K2CQ8TBX8 421 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 SHC3Q92529 594 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 MOV10L1Q9BXT6 1211 aaKnown RBP11.91□□□□□ -0.5
LDLR-208ENST00000558518 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.91□□□□□ -0.5
LDLR-208ENST00000558518 SEL1LQ9UBV2 794 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 CCPG1Q9ULG6 757 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 SMG5Q9UPR3 1016 aaKnown RBP11.91□□□□□ -0.5
LDLR-208ENST00000558518 SPATA31A1Q5TZJ5 1347 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 ANKRD36CQ5JPF3 1778 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 GLRA2P23416 452 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 GEMIN4P57678 1058 aaKnown RBP11.91□□□□□ -0.5
LDLR-208ENST00000558518 CDO1Q16878 200 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 TNFAIP8L3Q5GJ75 292 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 APOBEC3HQ6NTF7 200 aaKnown RBP11.91□□□□□ -0.5
LDLR-208ENST00000558518 RFX6Q8HWS3 928 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 KBTBD2Q8IY47 623 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 EMC1Q8N766 993 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 SMC1BQ8NDV3 1235 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 C7orf43Q8WVR3 580 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 APOL6Q9BWW8 343 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 NDE1Q9NXR1 346 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 IGKV6D-41A0A0C4DH26 115 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 TCRBV7S3A2A0A539 114 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 DNALI1O14645 258 aaPredicted RBP11.91□□□□□ -0.5
LDLR-208ENST00000558518 TOP3BO95985 862 aaKnown RBP11.91□□□□□ -0.5
LDLR-208ENST00000558518 FESP07332 822 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 ATP6V1B1P15313 513 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 LIG4P49917 911 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 GDF10P55107 478 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 PSMC5P62195 406 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 FAAP100Q0VG06 881 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 WASHC2DQ5SRD0 308 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 FNBP1LQ5T0N5 605 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 LPCAT4Q643R3 524 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 ZCCHC9Q8N567 271 aaKnown RBP11.91□□□□□ -0.5
LDLR-208ENST00000558518 HELQQ8TDG4 1101 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 INPP5DQ92835 1189 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 DNAJC1Q96KC8 554 aaKnown RBP11.91□□□□□ -0.5
LDLR-208ENST00000558518 TUBGCP5Q96RT8 1024 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 TRIM56Q9BRZ2 755 aaKnown RBP11.91□□□□□ -0.5
LDLR-208ENST00000558518 CLIC5Q9NZA1 410 aa11.91□□□□□ -0.5
LDLR-208ENST00000558518 PPEF1O14829 653 aaPredicted RBP11.9□□□□□ -0.5
LDLR-208ENST00000558518 CST8O60676 142 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 TRPA1O75762 1119 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 PROSCO94903 275 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 TJP3O95049 919 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 MCL1Q07820 350 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 UBAP2LQ14157 1087 aaKnown RBP11.9□□□□□ -0.5
LDLR-208ENST00000558518 CCNG2Q16589 344 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 DNAJC24Q6P3W2 148 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 ZBTB33Q86T24 672 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 SH3TC2Q8TF17 1288 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 EPAS1Q99814 870 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 COPEO14579 308 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 IL1R1P14778 569 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 NCF2P19878 526 aaPredicted RBP11.9□□□□□ -0.5
LDLR-208ENST00000558518 GCAP28676 217 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 ADSSP30520 456 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 PHBP35232 272 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 MSX2P35548 267 aaPredicted RBP11.9□□□□□ -0.5
LDLR-208ENST00000558518 RARRES1P49788 294 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 SLC25A3Q00325 362 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 CASC4Q6P4E1 433 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 SIAH1Q8IUQ4 282 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 CCDC110Q8TBZ0 833 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 MORC4Q8TE76 937 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 MTBPQ96DY7 904 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 ZBTB45Q96K62 511 aaPredicted RBP11.9□□□□□ -0.5
LDLR-208ENST00000558518 DDX18Q9NVP1 670 aaKnown RBP11.9□□□□□ -0.5
LDLR-208ENST00000558518 XPO7Q9UIA9 1087 aaKnown RBP11.9□□□□□ -0.5
LDLR-208ENST00000558518 AK5Q9Y6K8 562 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 UMODL1Q5DID0 1318 aa11.9□□□□□ -0.5
LDLR-208ENST00000558518 EP400Q96L91 3159 aa11.9□□□□□ -0.51
LDLR-208ENST00000558518 LRRIQ4A6NIV6 560 aa11.9□□□□□ -0.51
LDLR-208ENST00000558518 H0YIN7 160 aa11.9□□□□□ -0.51
LDLR-208ENST00000558518 NFIBO00712 420 aa11.9□□□□□ -0.51
LDLR-208ENST00000558518 ACADSP16219 412 aa11.9□□□□□ -0.51
LDLR-208ENST00000558518 BRD2P25440 801 aaKnown RBP11.9□□□□□ -0.51
LDLR-208ENST00000558518 SKIV2L2P42285 1042 aaKnown RBP11.9□□□□□ -0.51
LDLR-208ENST00000558518 TMEM179Q6ZVK1 233 aa11.9□□□□□ -0.51
LDLR-208ENST00000558518 GSTCDQ8NEC7 633 aa11.9□□□□□ -0.51
LDLR-208ENST00000558518 ACTL9Q8TC94 416 aa11.9□□□□□ -0.51
LDLR-208ENST00000558518 SNRNP27Q8WVK2 155 aaKnown RBP11.9□□□□□ -0.51
LDLR-208ENST00000558518 PHF12Q96QT6 1004 aa11.9□□□□□ -0.51
LDLR-208ENST00000558518 ZNF184Q99676 751 aaPredicted RBP11.9□□□□□ -0.51
LDLR-208ENST00000558518 ACSS2Q9NR19 701 aa11.9□□□□□ -0.51
LDLR-208ENST00000558518 PCMTD2Q9NV79 361 aa11.9□□□□□ -0.51
LDLR-208ENST00000558518 NXF1Q9UBU9 619 aaKnown RBP11.9□□□□□ -0.51
LDLR-208ENST00000558518 ARAP2Q8WZ64 1704 aa11.89□□□□□ -0.51
LDLR-208ENST00000558518 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.89□□□□□ -0.51
LDLR-208ENST00000558518 KIAA1551Q9HCM1 1747 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms