RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 USP37Q86T82 979 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 C4orf32Q8N8J7 132 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 KDF1Q8NAX2 398 aaPredicted RBP8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 SNX29Q8TEQ0 813 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 EZH1Q92800 747 aaPredicted RBP8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 KIF12Q96FN5 646 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 SEPT5Q99719 369 aaPredicted RBP8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 FAM83CQ9BQN1 747 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 SLC46A2Q9BY10 475 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 ADAM33Q9BZ11 813 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 EBF3Q9H4W6 596 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 TASP1Q9H6P5 420 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 FBRSL1Q9HCM7 1045 aaKnown RBP8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 GKN1Q9NS71 199 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 ASB3Q9Y575 518 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 IGSF10Q6WRI0 2623 aa8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 TP53BP1Q12888 1972 aaPredicted RBP8.88□□□□□ -0.99
CCDC88C-214ENST00000557507 GCN1Q92616 2671 aaKnown RBP8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 GOLGA4Q13439 2230 aaKnown RBP8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 NBEAQ8NFP9 2946 aa8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 BCLAF3A2AJT9 711 aaKnown RBP8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 TRDMT1O14717 391 aaKnown RBP8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 FGF19O95750 216 aa8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 MAPTP10636 758 aaKnown RBP8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 TYMPP19971 482 aa8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 CDC25CP30307 473 aa8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 NMT1P30419 496 aaKnown RBP8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 MCL1Q07820 350 aa8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 ORC2Q13416 577 aaPredicted RBP8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 RUNX3Q13761 415 aa8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 SH3PXD2AQ5TCZ1 1133 aa8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 RINT1Q6NUQ1 792 aa8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 DSTYKQ6XUX3 929 aa8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 C1orf186Q6ZWK4 172 aa8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 TMEM150AQ86TG1 271 aa8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 ITIH5Q86UX2 942 aa8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 CMTM8Q8IZV2 173 aa8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 TMEM161BQ8NDZ6 487 aa8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 STKLD1Q8NE28 680 aa8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 RPLP0P6Q8NHW5 317 aa8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 GATA6Q92908 595 aa8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 USP13Q92995 863 aaPredicted RBP8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 DRC1Q96MC2 740 aa8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 OXCT2Q9BYC2 517 aaPredicted RBP8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 LRWD1Q9UFC0 647 aa8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 UBQLN1Q9UMX0 589 aaKnown RBP8.87□□□□□ -0.99
CCDC88C-214ENST00000557507 KNL1Q8NG31 2342 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 LAMA5O15230 3695 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 LACTBL1A8MY62 500 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 PATE3B3GLJ2 98 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 FAM189A1O60320 539 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 ATG13O75143 517 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 CAVIN2O95810 425 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 CLTAP09496 248 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 ODC1P11926 461 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 CYP3A5P20815 502 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 CDC25AP30304 524 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 LILRA4P59901 499 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 PPP2R3AQ06190 1150 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 RAD51AP2Q09MP3 1159 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 STRN3Q13033 797 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 ACAP1Q15027 740 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 ANKRD1Q15327 319 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 ELF2Q15723 593 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 ENOX2Q16206 610 aaKnown RBP8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 MGAT5BQ3V5L5 792 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 SLC39A12Q504Y0 691 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 ZPBP2Q6X784 338 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 HSCBQ8IWL3 235 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 CAMKK1Q8N5S9 505 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 IGSF22Q8N9C0 903 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 GIPC2Q8TF65 315 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 SENP8Q96LD8 212 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 GCNAQ96QF7 691 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 MMTAG2Q9BU76 263 aaKnown RBP8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 SCNM1Q9BWG6 230 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 PLEKHA5Q9HAU0 1116 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 THG1LQ9NWX6 298 aaKnown RBP8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 HSFX1Q9UBD0 423 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 INVSQ9Y283 1065 aa8.86□□□□□ -0.99
CCDC88C-214ENST00000557507 CELSR3Q9NYQ7 3312 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 SMG1Q96Q15 3661 aaKnown RBP8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 SETXQ7Z333 2677 aaKnown RBP8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 FREM2Q5SZK8 3169 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 ANTXRLA6NF34 631 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 SRRM3A6NNA2 597 aaPredicted RBP8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 CDX4O14627 284 aaPredicted RBP8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 CLDN3O15551 220 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 TADA3O75528 432 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 RHOBTB1O94844 696 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 APBB3O95704 486 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 NFICP08651 508 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 PLS3P13797 630 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 HMGA1P17096 107 aaKnown RBP8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 BCKDHBP21953 392 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 GUCY2CP25092 1073 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 GBP1P32455 592 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 GJA4P35212 333 aa8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 MATR3P43243 847 aaKnown RBP eCLIP8.85□□□□□ -0.99
CCDC88C-214ENST00000557507 GPR15P49685 360 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms