RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	DSE	Q9UL01	958 aa		13.71	□□□□□ -0.21
SHMT2-223	ENST00000556689	NPHP3-ACAD11	A0A0J9YXS1	232 aa		13.7	□□□□□ -0.22
SHMT2-223	ENST00000556689	FAM189A1	O60320	539 aa		13.7	□□□□□ -0.22
SHMT2-223	ENST00000556689	KCNK5	O95279	499 aa		13.7	□□□□□ -0.22
SHMT2-223	ENST00000556689	PLA2G4B	P0C869	781 aa		13.7	□□□□□ -0.22
SHMT2-223	ENST00000556689	ATF6	P18850	670 aa		13.7	□□□□□ -0.22
SHMT2-223	ENST00000556689	AVPR1A	P37288	418 aa		13.7	□□□□□ -0.22
SHMT2-223	ENST00000556689	MPL	P40238	635 aa		13.7	□□□□□ -0.22
SHMT2-223	ENST00000556689	CDR1	P51861	262 aa		13.7	□□□□□ -0.22
SHMT2-223	ENST00000556689	NCKAP1L	P55160	1127 aa		13.7	□□□□□ -0.22
SHMT2-223	ENST00000556689	SMARCB1	Q12824	385 aa		13.7	□□□□□ -0.22
SHMT2-223	ENST00000556689	JADE1	Q6IE81	842 aa		13.7	□□□□□ -0.22
SHMT2-223	ENST00000556689	MAB21L3	Q8N8X9	362 aa		13.7	□□□□□ -0.22
SHMT2-223	ENST00000556689	SPPL2B	Q8TCT7	592 aa		13.7	□□□□□ -0.22
SHMT2-223	ENST00000556689	KCNN1	Q92952	543 aa		13.7	□□□□□ -0.22
SHMT2-223	ENST00000556689	CDK5RAP3	Q96JB5	506 aa		13.7	□□□□□ -0.22
SHMT2-223	ENST00000556689	PNMA5	Q96PV4	448 aa		13.7	□□□□□ -0.22
SHMT2-223	ENST00000556689	EBF3	Q9H4W6	596 aa		13.7	□□□□□ -0.22
SHMT2-223	ENST00000556689	HPS4	Q9NQG7	708 aa		13.7	□□□□□ -0.22
SHMT2-223	ENST00000556689	TDP1	Q9NUW8	608 aa		13.7	□□□□□ -0.22
SHMT2-223	ENST00000556689	TBX20	Q9UMR3	447 aa		13.7	□□□□□ -0.22
SHMT2-223	ENST00000556689	CIT	O14578	2027 aa		13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689		A0A0B4J269	797 aa		13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	ANO9	A1A5B4	782 aa		13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	OTOL1	A6NHN0	477 aa	Predicted RBP	13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	CYB561D2	O14569	222 aa		13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	HNRNPDL	O14979	420 aa	Known RBP	13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	RNF40	O75150	1001 aa		13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	EGF	P01133	1207 aa		13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	F11	P03951	625 aa		13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	HAPLN1	P10915	354 aa	Predicted RBP	13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	DRD1	P21728	446 aa		13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	SCP2	P22307	547 aa		13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	DDX6	P26196	483 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	GALK1	P51570	392 aa		13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	BFSP1	Q12934	665 aa		13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	PLK5	Q496M5	336 aa		13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	ARSH	Q5FYA8	562 aa		13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	RNF43	Q68DV7	783 aa		13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	TRIM68	Q6AZZ1	485 aa		13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	CC2D1A	Q6P1N0	951 aa	Predicted RBP	13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	LRRTM3	Q86VH5	581 aa		13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	EXOC4	Q96A65	974 aa		13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	MSTO1	Q9BUK6	570 aa		13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	SMOC1	Q9H4F8	434 aa		13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	FBRSL1	Q9HCM7	1045 aa	Known RBP	13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	CPSF3	Q9UKF6	684 aa	Known RBP	13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	DERA	Q9Y315	318 aa		13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	RALGAPA1	Q6GYQ0	2036 aa		13.69	□□□□□ -0.22
SHMT2-223	ENST00000556689	SOBP	A7XYQ1	873 aa		13.68	□□□□□ -0.22
SHMT2-223	ENST00000556689	RHOBTB1	O94844	696 aa		13.68	□□□□□ -0.22
SHMT2-223	ENST00000556689	PIGR	P01833	764 aa		13.68	□□□□□ -0.22
SHMT2-223	ENST00000556689	PROS1	P07225	676 aa		13.68	□□□□□ -0.22
SHMT2-223	ENST00000556689	ARSA	P15289	507 aa		13.68	□□□□□ -0.22
SHMT2-223	ENST00000556689	NLRP12	P59046	1061 aa		13.68	□□□□□ -0.22
SHMT2-223	ENST00000556689	TMEM132D	Q14C87	1099 aa		13.68	□□□□□ -0.22
SHMT2-223	ENST00000556689	ELF2	Q15723	593 aa		13.68	□□□□□ -0.22
SHMT2-223	ENST00000556689	FBXO43	Q4G163	708 aa		13.68	□□□□□ -0.22
SHMT2-223	ENST00000556689	DCP1B	Q8IZD4	617 aa	Known RBP	13.68	□□□□□ -0.22
SHMT2-223	ENST00000556689	MYCT1	Q8N699	235 aa		13.68	□□□□□ -0.22
SHMT2-223	ENST00000556689	USP13	Q92995	863 aa	Predicted RBP	13.68	□□□□□ -0.22
SHMT2-223	ENST00000556689	CHFR	Q96EP1	664 aa		13.68	□□□□□ -0.22
SHMT2-223	ENST00000556689	PYM1	Q9BRP8	204 aa	Known RBP	13.68	□□□□□ -0.22
SHMT2-223	ENST00000556689	DUSP15	Q9H1R2	295 aa	Predicted RBP	13.68	□□□□□ -0.22
SHMT2-223	ENST00000556689	KIF9	Q9HAQ2	790 aa		13.68	□□□□□ -0.22
SHMT2-223	ENST00000556689	POLR3B	Q9NW08	1133 aa	Predicted RBP	13.68	□□□□□ -0.22
SHMT2-223	ENST00000556689	ABI2	Q9NYB9	513 aa	Predicted RBP	13.68	□□□□□ -0.22
SHMT2-223	ENST00000556689	ODF2L	Q9ULJ1	636 aa		13.68	□□□□□ -0.22
SHMT2-223	ENST00000556689	CCL26	Q9Y258	94 aa		13.68	□□□□□ -0.22
SHMT2-223	ENST00000556689	MAP1B	P46821	2468 aa	Known RBP	13.67	□□□□□ -0.22
SHMT2-223	ENST00000556689	CAVIN2	O95810	425 aa		13.67	□□□□□ -0.22
SHMT2-223	ENST00000556689	NFIC	P08651	508 aa		13.67	□□□□□ -0.22
SHMT2-223	ENST00000556689	HMGA1	P17096	107 aa	Known RBP	13.67	□□□□□ -0.22
SHMT2-223	ENST00000556689	NMT1	P30419	496 aa	Known RBP	13.67	□□□□□ -0.22
SHMT2-223	ENST00000556689	TAF6	P49848	677 aa		13.67	□□□□□ -0.22
SHMT2-223	ENST00000556689	KARS	Q15046	597 aa	Known RBP	13.67	□□□□□ -0.22
SHMT2-223	ENST00000556689	PDGFRL	Q15198	375 aa		13.67	□□□□□ -0.22
SHMT2-223	ENST00000556689	WSCD1	Q658N2	575 aa		13.67	□□□□□ -0.22
SHMT2-223	ENST00000556689	TXNDC8	Q6A555	127 aa		13.67	□□□□□ -0.22
SHMT2-223	ENST00000556689	PSAPL1	Q6NUJ1	521 aa		13.67	□□□□□ -0.22
SHMT2-223	ENST00000556689	SYT13	Q7L8C5	426 aa		13.67	□□□□□ -0.22
SHMT2-223	ENST00000556689	TMEM150A	Q86TG1	271 aa		13.67	□□□□□ -0.22
SHMT2-223	ENST00000556689	MON1A	Q86VX9	555 aa		13.67	□□□□□ -0.22
SHMT2-223	ENST00000556689	MRPS31	Q92665	395 aa	Known RBP	13.67	□□□□□ -0.22
SHMT2-223	ENST00000556689	HHIP	Q96QV1	700 aa		13.67	□□□□□ -0.22
SHMT2-223	ENST00000556689	P2RY13	Q9BPV8	354 aa		13.67	□□□□□ -0.22
SHMT2-223	ENST00000556689	ASB7	Q9H672	318 aa		13.67	□□□□□ -0.22
SHMT2-223	ENST00000556689	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.67	□□□□□ -0.22
SHMT2-223	ENST00000556689	PCDHB5	Q9Y5E4	795 aa		13.67	□□□□□ -0.22
SHMT2-223	ENST00000556689	PDCD11	Q14690	1871 aa	Known RBP	13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	SDK1	Q7Z5N4	2213 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	VWA3A	A6NCI4	1184 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689		K7ENM7	598 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	DCLK1	O15075	740 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	TRAK2	O60296	914 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	FAM13A	O94988	1023 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	APBB3	O95704	486 aa		13.66	□□□□□ -0.22
SHMT2-223	ENST00000556689	CSH1	P0DML2	217 aa		13.66	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms