RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 RGMBQ6NW40 437 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 C6orf89Q6UWU4 347 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 CEP57Q86XR8 500 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 IFNL1Q8IU54 200 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 ZNF473Q8WTR7 871 aaKnown RBP12.38□□□□□ -0.43
SHMT2-212ENST00000554467 MAGOHBQ96A72 148 aaKnown RBP12.38□□□□□ -0.43
SHMT2-212ENST00000554467 CALR3Q96L12 384 aaKnown RBP12.38□□□□□ -0.43
SHMT2-212ENST00000554467 ACAP3Q96P50 834 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 MCEEQ96PE7 176 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 WNT8AQ9H1J5 351 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 SLC5A4Q9NY91 659 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 CYTH4Q9UIA0 394 aa12.38□□□□□ -0.43
SHMT2-212ENST00000554467 A6NJR5 290 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 GOLGA8KD6RF30 607 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 PI4K2BG5E9Z4 385 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 KIAA0754O94854 1291 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 ECHS1P30084 290 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 HOXA11P31270 313 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-212ENST00000554467 DR1Q01658 176 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 PTP4A2Q12974 167 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 MFSD10Q14728 455 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 SURF1Q15526 300 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 CEP85LQ5SZL2 805 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 LIN9Q5TKA1 542 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 CCDC50Q8IVM0 306 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 OR2W6PQ8NHA6 318 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 C18orf25Q96B23 403 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-212ENST00000554467 NFKBIZQ9BYH8 718 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 NXF3Q9H4D5 531 aaKnown RBP12.37□□□□□ -0.43
SHMT2-212ENST00000554467 CNTN6Q9UQ52 1028 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 PCDHA3Q9Y5H8 950 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 DNM1LO00429 736 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 IL18RAPO95256 599 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 RARAP10276 462 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 RWDD2BP57060 319 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 RNF187Q5TA31 235 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-212ENST00000554467 HPDLQ96IR7 371 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 ZMAT2Q96NC0 199 aaKnown RBP12.37□□□□□ -0.43
SHMT2-212ENST00000554467 TRIM6Q9C030 488 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-212ENST00000554467 ADAMTS10Q9H324 1103 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 ABT1Q9ULW3 272 aaKnown RBP12.37□□□□□ -0.43
SHMT2-212ENST00000554467 A0A1B0GUA9 196 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 CCDC188H7C350 402 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 OPA1O60313 960 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 IFT88Q13099 833 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 NNTQ13423 1086 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 TCEAL1Q15170 157 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 E2F5Q15329 346 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 FAM187BQ17R55 369 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 C17orf99Q6UX52 265 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 ANKS1BQ7Z6G8 1248 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 SESTD1Q86VW0 696 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 LPIN3Q9BQK8 851 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 ADPGKQ9BRR6 497 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 ELOVL4Q9GZR5 314 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 EPN3Q9H201 632 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 SNX24Q9Y343 169 aa12.37□□□□□ -0.43
SHMT2-212ENST00000554467 GOLGA6L10A0A0M3HER8 536 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 KIF3CO14782 793 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 HCRTO43612 131 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 GPR32O75388 356 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 F2P00734 622 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 POU5F1Q01860 360 aaKnown RBP12.36□□□□□ -0.43
SHMT2-212ENST00000554467 NBPF20Q3BBV1 942 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 ODF2Q5BJF6 829 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 EMBQ6PCB8 327 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 FUKQ8N0W3 1084 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 C12orf29Q8N999 325 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 UBA3Q8TBC4 463 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 DPP3Q9NY33 737 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 TUBGCP4Q9UGJ1 667 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 TPX2Q9ULW0 747 aaKnown RBP12.36□□□□□ -0.43
SHMT2-212ENST00000554467 SCN1AP35498 2009 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 COL1A2P08123 1366 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 CITO14578 2027 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 KLHL33A6NCF5 533 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 F8VP50 259 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 C6orf222P0C671 652 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-212ENST00000554467 HOXD8P13378 290 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-212ENST00000554467 MMP8P22894 467 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 RAD23BP54727 409 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 OGDHQ02218 1023 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 ACCSLQ4AC99 568 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 CYB5D1Q6P9G0 228 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 SLC13A5Q86YT5 568 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-212ENST00000554467 PARP9Q8IXQ6 854 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 CCDC26Q8TAB7 109 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 CXorf38Q8TB03 319 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 RNF25Q96BH1 459 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-212ENST00000554467 TTC7AQ9ULT0 858 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-212ENST00000554467 PIN4Q9Y237 131 aaKnown RBP12.36□□□□□ -0.43
SHMT2-212ENST00000554467 MANSC4A6NHS7 340 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-212ENST00000554467 PGK1P00558 417 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 RPSAP08865 295 aaKnown RBP12.36□□□□□ -0.43
SHMT2-212ENST00000554467 PSEN2P49810 448 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 TRIM32Q13049 653 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 TRIP13Q15645 432 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-212ENST00000554467 TXNRD3NBQ6F5E7 133 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 DCUN1D2Q6PH85 259 aa12.36□□□□□ -0.43
SHMT2-212ENST00000554467 WHAMMQ8TF30 809 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms