RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 UPF3AQ9H1J1 476 aaKnown RBP13.52□□□□□ -0.25
VIPAS39-206ENST00000553888 SPTLC1O15269 473 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 MICAL2O94851 1124 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 ALDH1A1P00352 501 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 GNAT1P11488 350 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 ATICP31939 592 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 CDC42EP1Q00587 391 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 ANKS1BQ7Z6G8 1248 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 ERICH1Q86X53 443 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 AENQ8WTP8 325 aaKnown RBP13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 LPPQ93052 612 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 C18orf8Q96DM3 657 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 TRIM11Q96F44 468 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 VRTNQ9H8Y1 702 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 CNTN3Q9P232 1028 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 PCDHGC3Q9UN70 934 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 TCRBV5S1A1TA0A578 114 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 H3BQF6 201 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 M0QYV0 167 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 TOMM70O94826 608 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 C9orf57Q5W0N0 161 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 SND1Q7KZF4 910 aaKnown RBP eCLIP13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 ACOT1Q86TX2 421 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 KRT222Q8N1A0 295 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 TRIM31Q9BZY9 425 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 DPEP3Q9H4B8 488 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 AGO3Q9H9G7 860 aaKnown RBP13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 GDF3Q9NR23 364 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 FAM49BQ9NUQ9 324 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 ST3GAL5Q9UNP4 418 aa13.51□□□□□ -0.25
VIPAS39-206ENST00000553888 F8VP50 259 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 TULP2O00295 520 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 PROSCO94903 275 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 ERBB2P04626 1255 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 CTNNA2P26232 953 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 YWHAEP62258 255 aaKnown RBP13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 CCDC142Q17RM4 750 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 TXNRD3NBQ6F5E7 133 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 HDXQ7Z353 690 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 JOSD2Q8TAC2 188 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 FEZF2Q8TBJ5 459 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 FAM118BQ9BPY3 351 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 PLEKHA5Q9HAU0 1116 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 SPC25Q9HBM1 224 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 TRMT13Q9NUP7 481 aaKnown RBP13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 TTC7AQ9ULT0 858 aaPredicted RBP13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 CCDC66A2RUB6 948 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 RWDD2BP57060 319 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 POU5F1Q01860 360 aaKnown RBP13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 SEL1L2Q5TEA6 688 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 DNAJC24Q6P3W2 148 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 TTC27Q6P3X3 843 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 EMC1Q8N766 993 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 PRELID2Q8N945 189 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 CALR3Q96L12 384 aaKnown RBP13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 NEUROG2Q9H2A3 272 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 PARVAQ9NVD7 372 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 BARX2Q9UMQ3 279 aaPredicted RBP13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 LSM8O95777 96 aaKnown RBP13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 CDH5P33151 784 aaPredicted RBP13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 THPOP40225 353 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 GLE1Q53GS7 698 aaKnown RBP13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 TAF2Q6P1X5 1199 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 BEST2Q8NFU1 509 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 DDX27Q96GQ7 796 aaKnown RBP13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 PIWIL1Q96J94 861 aaKnown RBP13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 VCPIP1Q96JH7 1222 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 HEMGNQ9BXL5 484 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 DPH5Q9H2P9 285 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 TRPV2Q9Y5S1 764 aa13.5□□□□□ -0.25
VIPAS39-206ENST00000553888 TMEM191CA6NGB0 347 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 PI4K2BG5E9Z4 385 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 RPS6KA5O75582 802 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 PAEPP09466 180 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 PDGFRBP09619 1106 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 AXLP30530 894 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 KCNJ1P48048 391 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 INCA1Q0VD86 236 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 MYO1EQ12965 1108 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 SOWAHAQ2M3V2 549 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 CCSAPQ6IQ19 270 aaPredicted RBP13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 SERINC5Q86VE9 423 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 CD302Q8IX05 232 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 NME8Q8N427 588 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 TSEN2Q8NCE0 465 aaKnown RBP13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 SENP6Q9GZR1 1112 aaPredicted RBP13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 CYP3A43Q9HB55 503 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 MRPL47Q9HD33 250 aaKnown RBP13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 CREBZFQ9NS37 354 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 PTGESO14684 152 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 CALB1P05937 261 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 TUBBP07437 444 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 RARAP10276 462 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 FGFR1P11362 822 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 P4HA1P13674 534 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 LMO2P25791 158 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 RFC1P35251 1148 aaPredicted RBP13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 RGS7P49802 495 aa13.49□□□□□ -0.25
VIPAS39-206ENST00000553888 SMC1AQ14683 1233 aaKnown RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms