RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 CFAP54Q96N23 3096 aa12.38□□□□□ -0.43
NEK3-204ENST00000552973 MYBPHLA2RUH7 354 aa12.37□□□□□ -0.43
NEK3-204ENST00000552973 CHURC1-FNTBB4DL54 471 aa12.37□□□□□ -0.43
NEK3-204ENST00000552973 PRPF6O94906 941 aaKnown RBP12.37□□□□□ -0.43
NEK3-204ENST00000552973 FGF19O95750 216 aa12.37□□□□□ -0.43
NEK3-204ENST00000552973 SYT1P21579 422 aa12.37□□□□□ -0.43
NEK3-204ENST00000552973 ACAT1P24752 427 aaKnown RBP12.37□□□□□ -0.43
NEK3-204ENST00000552973 POLR2BP30876 1174 aaKnown RBP12.37□□□□□ -0.43
NEK3-204ENST00000552973 CTHP32929 405 aa12.37□□□□□ -0.43
NEK3-204ENST00000552973 TXLNAP40222 546 aa12.37□□□□□ -0.43
NEK3-204ENST00000552973 FNTBP49356 437 aa12.37□□□□□ -0.43
NEK3-204ENST00000552973 SRSF5Q13243 272 aaKnown RBP12.37□□□□□ -0.43
NEK3-204ENST00000552973 PPP2R5DQ14738 602 aa12.37□□□□□ -0.43
NEK3-204ENST00000552973 POSTNQ15063 836 aa12.37□□□□□ -0.43
NEK3-204ENST00000552973 SV2CQ496J9 727 aa12.37□□□□□ -0.43
NEK3-204ENST00000552973 ARHGAP29Q52LW3 1261 aa12.37□□□□□ -0.43
NEK3-204ENST00000552973 L1TD1Q5T7N2 865 aaKnown RBP12.37□□□□□ -0.43
NEK3-204ENST00000552973 HEATR6Q6AI08 1181 aaKnown RBP12.37□□□□□ -0.43
NEK3-204ENST00000552973 DCP1BQ8IZD4 617 aaKnown RBP12.37□□□□□ -0.43
NEK3-204ENST00000552973 SYCP3Q8IZU3 236 aa12.37□□□□□ -0.43
NEK3-204ENST00000552973 MAB21L3Q8N8X9 362 aa12.37□□□□□ -0.43
NEK3-204ENST00000552973 SPPL2BQ8TCT7 592 aa12.37□□□□□ -0.43
NEK3-204ENST00000552973 SECISBP2LQ93073 1101 aaKnown RBP12.37□□□□□ -0.43
NEK3-204ENST00000552973 HVCN1Q96D96 273 aa12.37□□□□□ -0.43
NEK3-204ENST00000552973 GCNAQ96QF7 691 aa12.37□□□□□ -0.43
NEK3-204ENST00000552973 C2orf42Q9NWW7 574 aa12.37□□□□□ -0.43
NEK3-204ENST00000552973 DLL3Q9NYJ7 618 aa12.37□□□□□ -0.43
NEK3-204ENST00000552973 HSFX1Q9UBD0 423 aa12.37□□□□□ -0.43
NEK3-204ENST00000552973 GMEB2Q9UKD1 530 aa12.37□□□□□ -0.43
NEK3-204ENST00000552973 EXOC7Q9UPT5 735 aa12.37□□□□□ -0.43
NEK3-204ENST00000552973 CACNA1IQ9P0X4 2223 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 A0A087X0B3 334 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 HCRTO43612 131 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 PRPF40AO75400 957 aaKnown RBP12.36□□□□□ -0.43
NEK3-204ENST00000552973 IL18RAPO95256 599 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 ITGB3P05106 788 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 KRT19P08727 400 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 GAP43P17677 238 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 PDCP20941 246 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 CDC25CP30307 473 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 NRLP54845 237 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 MLLT6P55198 1093 aaPredicted RBP12.36□□□□□ -0.43
NEK3-204ENST00000552973 SPEM2Q0P670 501 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 BFSP1Q12934 665 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 LRRC32Q14392 662 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 CCDC142Q17RM4 750 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 LMBRD2Q68DH5 695 aaPredicted RBP12.36□□□□□ -0.43
NEK3-204ENST00000552973 TRIM68Q6AZZ1 485 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 MAMSTRQ6ZN01 415 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 BRSK2Q8IWQ3 736 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 PDCL2Q8N4E4 241 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 SPEM1Q8N4L4 309 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 CSGALNACT2Q8N6G5 542 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 PDILTQ8N807 584 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 C1orf127Q8N9H9 656 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 C2orf15Q8WU43 125 aaKnown RBP12.36□□□□□ -0.43
NEK3-204ENST00000552973 ZNF560Q96MR9 790 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 USP28Q96RU2 1077 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 CBWD1Q9BRT8 395 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 FAM126AQ9BYI3 521 aaPredicted RBP12.36□□□□□ -0.43
NEK3-204ENST00000552973 PARD6AQ9NPB6 346 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 GKN1Q9NS71 199 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 PANK4Q9NVE7 773 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 DDX43Q9NXZ2 648 aaKnown RBP12.36□□□□□ -0.43
NEK3-204ENST00000552973 RBAKQ9NYW8 714 aaPredicted RBP12.36□□□□□ -0.43
NEK3-204ENST00000552973 RAB23Q9ULC3 237 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 L1RE1Q9UN81 338 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 CCL26Q9Y258 94 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 PCDHB5Q9Y5E4 795 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 PCDHB13Q9Y5F0 798 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 FAM186AA6NE01 2351 aa12.36□□□□□ -0.43
NEK3-204ENST00000552973 CITO14578 2027 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 RIF1Q5UIP0 2472 aaKnown RBP12.35□□□□□ -0.43
NEK3-204ENST00000552973 HRO43593 1189 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 F11P03951 625 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 HMGA1P17096 107 aaKnown RBP12.35□□□□□ -0.43
NEK3-204ENST00000552973 TGM1P22735 817 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 CYP2F1P24903 491 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 STAT6P42226 847 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 NLRP12P59046 1061 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 TSPY1Q01534 308 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 POU5F1Q01860 360 aaKnown RBP12.35□□□□□ -0.43
NEK3-204ENST00000552973 SIM2Q14190 667 aaPredicted RBP12.35□□□□□ -0.43
NEK3-204ENST00000552973 DDR2Q16832 855 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 TXNDC8Q6A555 127 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 CCDC73Q6ZRK6 1079 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 TMEM150AQ86TG1 271 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 OSTM1Q86WC4 334 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 RALGPS2Q86X27 583 aaPredicted RBP12.35□□□□□ -0.43
NEK3-204ENST00000552973 NT5DC4Q86YG4 428 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 CMTM8Q8IZV2 173 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 CELF5Q8N6W0 485 aaKnown RBP12.35□□□□□ -0.43
NEK3-204ENST00000552973 TTC16Q8NEE8 873 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 HPS3Q969F9 1004 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 MSANTD3Q96H12 275 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 IER2Q9BTL4 223 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 PDE11AQ9HCR9 933 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 THG1LQ9NWX6 298 aaKnown RBP12.35□□□□□ -0.43
NEK3-204ENST00000552973 OBP2AQ9NY56 170 aa12.35□□□□□ -0.43
NEK3-204ENST00000552973 SEL1LQ9UBV2 794 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms