RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 PDCL2Q8N4E4 241 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 LRRC52Q8N7C0 313 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 CXorf38Q8TB03 319 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 SPPL2BQ8TCT7 592 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 DNASE1L2Q92874 299 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 ANKRD36BP1Q96IX9 119 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 GPR88Q9GZN0 384 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 LTB4R2Q9NPC1 389 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 SIX4Q9UIU6 781 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 L1RE1Q9UN81 338 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 CFAP54Q96N23 3096 aa17.58■□□□□ 0.4
VPS29-207ENST00000549970 PTPRJQ12913 1337 aa17.57■□□□□ 0.4
VPS29-207ENST00000549970 ZNF233A6NK53 670 aa17.57■□□□□ 0.4
VPS29-207ENST00000549970 HEPACAM2A8MVW5 462 aa17.57■□□□□ 0.4
VPS29-207ENST00000549970 RBP5P82980 135 aa17.57■□□□□ 0.4
VPS29-207ENST00000549970 SMARCB1Q12824 385 aa17.57■□□□□ 0.4
VPS29-207ENST00000549970 TAF12Q16514 161 aa17.57■□□□□ 0.4
VPS29-207ENST00000549970 C1orf210Q8IVY1 113 aa17.57■□□□□ 0.4
VPS29-207ENST00000549970 OR5B17Q8NGF7 314 aa17.57■□□□□ 0.4
VPS29-207ENST00000549970 ZNF507Q8TCN5 953 aa17.57■□□□□ 0.4
VPS29-207ENST00000549970 GIPC2Q8TF65 315 aa17.57■□□□□ 0.4
VPS29-207ENST00000549970 C2orf15Q8WU43 125 aaKnown RBP17.57■□□□□ 0.4
VPS29-207ENST00000549970 DEPDC1BQ8WUY9 529 aa17.57■□□□□ 0.4
VPS29-207ENST00000549970 IRF7Q92985 503 aa17.57■□□□□ 0.4
VPS29-207ENST00000549970 BCO2Q9BYV7 579 aa17.57■□□□□ 0.4
VPS29-207ENST00000549970 TRPV4Q9HBA0 871 aa17.57■□□□□ 0.4
VPS29-207ENST00000549970 TMLHEQ9NVH6 421 aa17.57■□□□□ 0.4
VPS29-207ENST00000549970 INTS13Q9NVM9 706 aa17.57■□□□□ 0.4
VPS29-207ENST00000549970 DDX43Q9NXZ2 648 aaKnown RBP17.57■□□□□ 0.4
VPS29-207ENST00000549970 R3HCC1Q9Y3T6 440 aaKnown RBP17.57■□□□□ 0.4
VPS29-207ENST00000549970 SNX9Q9Y5X1 595 aa17.57■□□□□ 0.4
VPS29-207ENST00000549970 CACNA1IQ9P0X4 2223 aa17.56■□□□□ 0.4
VPS29-207ENST00000549970 UBE4BO95155 1302 aa17.56■□□□□ 0.4
VPS29-207ENST00000549970 PRR23AA6NEV1 266 aa17.56■□□□□ 0.4
VPS29-207ENST00000549970 CLIC2O15247 247 aa17.56■□□□□ 0.4
VPS29-207ENST00000549970 TGFB1I1O43294 461 aa17.56■□□□□ 0.4
VPS29-207ENST00000549970 TNNC2P02585 160 aa17.56■□□□□ 0.4
VPS29-207ENST00000549970 HAPLN1P10915 354 aaPredicted RBP17.56■□□□□ 0.4
VPS29-207ENST00000549970 ACAT1P24752 427 aaKnown RBP17.56■□□□□ 0.4
VPS29-207ENST00000549970 TARSP26639 723 aaKnown RBP17.56■□□□□ 0.4
VPS29-207ENST00000549970 CUL4BQ13620 913 aa17.56■□□□□ 0.4
VPS29-207ENST00000549970 SURF1Q15526 300 aa17.56■□□□□ 0.4
VPS29-207ENST00000549970 ARHGAP15Q53QZ3 475 aa17.56■□□□□ 0.4
VPS29-207ENST00000549970 GPR158Q5T848 1215 aa17.56■□□□□ 0.4
VPS29-207ENST00000549970 OSTM1Q86WC4 334 aa17.56■□□□□ 0.4
VPS29-207ENST00000549970 MFSD6LQ8IWD5 586 aa17.56■□□□□ 0.4
VPS29-207ENST00000549970 GRAMD1CQ8IYS0 662 aa17.56■□□□□ 0.4
VPS29-207ENST00000549970 RDH13Q8NBN7 331 aa17.56■□□□□ 0.4
VPS29-207ENST00000549970 SCFD1Q8WVM8 642 aa17.56■□□□□ 0.4
VPS29-207ENST00000549970 NKD2Q969F2 451 aaPredicted RBP17.56■□□□□ 0.4
VPS29-207ENST00000549970 RSPRY1Q96DX4 576 aa17.56■□□□□ 0.4
VPS29-207ENST00000549970 SLC39A2Q9NP94 309 aa17.56■□□□□ 0.4
VPS29-207ENST00000549970 AGPAT3Q9NRZ7 376 aa17.56■□□□□ 0.4
VPS29-207ENST00000549970 RCOR1Q9UKL0 485 aa17.56■□□□□ 0.4
VPS29-207ENST00000549970 PCDHB5Q9Y5E4 795 aa17.56■□□□□ 0.4
VPS29-207ENST00000549970 TICRRQ7Z2Z1 1910 aa17.56■□□□□ 0.4
VPS29-207ENST00000549970 ZNF263O14978 683 aa17.55■□□□□ 0.4
VPS29-207ENST00000549970 FGF19O95750 216 aa17.55■□□□□ 0.4
VPS29-207ENST00000549970 GPR15P49685 360 aa17.55■□□□□ 0.4
VPS29-207ENST00000549970 CYP2J2P51589 502 aa17.55■□□□□ 0.4
VPS29-207ENST00000549970 CYP4F8P98187 520 aa17.55■□□□□ 0.4
VPS29-207ENST00000549970 MYL7Q01449 175 aa17.55■□□□□ 0.4
VPS29-207ENST00000549970 EHHADHQ08426 723 aa17.55■□□□□ 0.4
VPS29-207ENST00000549970 SNRNP35Q16560 246 aaKnown RBP17.55■□□□□ 0.4
VPS29-207ENST00000549970 ZNF852Q6ZMS4 543 aa17.55■□□□□ 0.4
VPS29-207ENST00000549970 ARID3BQ8IVW6 561 aaPredicted RBP17.55■□□□□ 0.4
VPS29-207ENST00000549970 YAF2Q8IY57 180 aa17.55■□□□□ 0.4
VPS29-207ENST00000549970 CEP57L1Q8IYX8 460 aa17.55■□□□□ 0.4
VPS29-207ENST00000549970 ADGRF2Q8IZF7 708 aa17.55■□□□□ 0.4
VPS29-207ENST00000549970 TMEM86AQ8N2M4 240 aa17.55■□□□□ 0.4
VPS29-207ENST00000549970 E2F7Q96AV8 911 aa17.55■□□□□ 0.4
VPS29-207ENST00000549970 GCNAQ96QF7 691 aa17.55■□□□□ 0.4
VPS29-207ENST00000549970 ACBD6Q9BR61 282 aa17.55■□□□□ 0.4
VPS29-207ENST00000549970 PI4K2AQ9BTU6 479 aa17.55■□□□□ 0.4
VPS29-207ENST00000549970 MKNK1Q9BUB5 465 aa17.55■□□□□ 0.4
VPS29-207ENST00000549970 OSBPL6Q9BZF3 934 aa17.55■□□□□ 0.4
VPS29-207ENST00000549970 KIAA1586Q9HCI6 787 aa17.55■□□□□ 0.4
VPS29-207ENST00000549970 SPATA6Q9NWH7 488 aaPredicted RBP17.55■□□□□ 0.4
VPS29-207ENST00000549970 GDAP2Q9NXN4 497 aa17.55■□□□□ 0.4
VPS29-207ENST00000549970 SERTAD1Q9UHV2 236 aa17.55■□□□□ 0.4
VPS29-207ENST00000549970 F5P12259 2224 aa17.55■□□□□ 0.4
VPS29-207ENST00000549970 PRPF40AO75400 957 aaKnown RBP17.54■□□□□ 0.4
VPS29-207ENST00000549970 DLATP10515 647 aaKnown RBP17.54■□□□□ 0.4
VPS29-207ENST00000549970 CDC25CP30307 473 aa17.54■□□□□ 0.4
VPS29-207ENST00000549970 MYO1EQ12965 1108 aa17.54■□□□□ 0.4
VPS29-207ENST00000549970 NFE2Q16621 373 aaPredicted RBP17.54■□□□□ 0.4
VPS29-207ENST00000549970 DUOXA2Q1HG44 320 aa17.54■□□□□ 0.4
VPS29-207ENST00000549970 INTS6LQ5JSJ4 861 aaKnown RBP17.54■□□□□ 0.4
VPS29-207ENST00000549970 HS2ST1Q7LGA3 356 aa17.54■□□□□ 0.4
VPS29-207ENST00000549970 WDR49Q8IV35 697 aa17.54■□□□□ 0.4
VPS29-207ENST00000549970 TOP6BLQ8N6T0 577 aa17.54■□□□□ 0.4
VPS29-207ENST00000549970 STKLD1Q8NE28 680 aa17.54■□□□□ 0.4
VPS29-207ENST00000549970 HPDLQ96IR7 371 aa17.54■□□□□ 0.4
VPS29-207ENST00000549970 CHAMP1Q96JM3 812 aa17.54■□□□□ 0.4
VPS29-207ENST00000549970 NELL2Q99435 816 aa17.54■□□□□ 0.4
VPS29-207ENST00000549970 IL21Q9HBE4 155 aa17.54■□□□□ 0.4
VPS29-207ENST00000549970 NDRG2Q9UN36 371 aaKnown RBP17.54■□□□□ 0.4
VPS29-207ENST00000549970 MRPS17Q9Y2R5 130 aaKnown RBP17.54■□□□□ 0.4
VPS29-207ENST00000549970 R4GN57 208 aa17.54■□□□□ 0.4
VPS29-207ENST00000549970 COL4A2P08572 1712 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms