RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 RPF1Q9H9Y2 349 aaKnown RBP17.62■□□□□ 0.41
CHMP1A-204ENST00000547687 SLC28A3Q9HAS3 691 aa17.62■□□□□ 0.41
CHMP1A-204ENST00000547687 GDF3Q9NR23 364 aa17.62■□□□□ 0.41
CHMP1A-204ENST00000547687 ALG6Q9Y672 507 aa17.62■□□□□ 0.41
CHMP1A-204ENST00000547687 LCHNA4D1U4 455 aa17.62■□□□□ 0.41
CHMP1A-204ENST00000547687 HOXA11P31270 313 aaPredicted RBP17.62■□□□□ 0.41
CHMP1A-204ENST00000547687 GUCY2DQ02846 1103 aa17.62■□□□□ 0.41
CHMP1A-204ENST00000547687 SURF1Q15526 300 aa17.62■□□□□ 0.41
CHMP1A-204ENST00000547687 PPP2R2DQ66LE6 453 aa17.62■□□□□ 0.41
CHMP1A-204ENST00000547687 C11orf63Q6NUN7 778 aa17.62■□□□□ 0.41
CHMP1A-204ENST00000547687 ZBTB9Q96C00 473 aa17.62■□□□□ 0.41
CHMP1A-204ENST00000547687 AP1M1Q9BXS5 423 aa17.62■□□□□ 0.41
CHMP1A-204ENST00000547687 MTMR12Q9C0I1 747 aa17.62■□□□□ 0.41
CHMP1A-204ENST00000547687 EPB41L5Q9HCM4 733 aa17.62■□□□□ 0.41
CHMP1A-204ENST00000547687 KRIT1O00522 736 aa17.61■□□□□ 0.41
CHMP1A-204ENST00000547687 PHACTR2O75167 634 aa17.61■□□□□ 0.41
CHMP1A-204ENST00000547687 MTA2O94776 668 aa17.61■□□□□ 0.41
CHMP1A-204ENST00000547687 MRPS6P82932 125 aaKnown RBP17.61■□□□□ 0.41
CHMP1A-204ENST00000547687 LPIN1Q14693 890 aa17.61■□□□□ 0.41
CHMP1A-204ENST00000547687 FAM26DQ5JW98 314 aa17.61■□□□□ 0.41
CHMP1A-204ENST00000547687 SPOPLQ6IQ16 392 aa17.61■□□□□ 0.41
CHMP1A-204ENST00000547687 ACAD10Q6JQN1 1059 aa17.61■□□□□ 0.41
CHMP1A-204ENST00000547687 SND1Q7KZF4 910 aaKnown RBP eCLIP17.61■□□□□ 0.41
CHMP1A-204ENST00000547687 RSPH3Q86UC2 560 aa17.61■□□□□ 0.41
CHMP1A-204ENST00000547687 EFCAB13Q8IY85 973 aa17.61■□□□□ 0.41
CHMP1A-204ENST00000547687 NME8Q8N427 588 aa17.61■□□□□ 0.41
CHMP1A-204ENST00000547687 ADPGKQ9BRR6 497 aa17.61■□□□□ 0.41
CHMP1A-204ENST00000547687 TTC7AQ9ULT0 858 aaPredicted RBP17.61■□□□□ 0.41
CHMP1A-204ENST00000547687 PCDHA11Q9Y5I1 949 aa17.61■□□□□ 0.41
CHMP1A-204ENST00000547687 CCDC188H7C350 402 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 MEFVO15553 781 aaPredicted RBP17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 RAD51CO43502 376 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 TLL1O43897 1013 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 CAND2O75155 1236 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 CST3P01034 146 aaPredicted RBP17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 CYP1A2P05177 515 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 CLTAP09496 248 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 AP3M2P53677 418 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 BPIFB4P59827 614 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 HSP90B2PQ58FF3 399 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 ZBED2Q9BTP6 218 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 PLEKHA4Q9H4M7 779 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 AGO3Q9H9G7 860 aaKnown RBP17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 CHORDC1Q9UHD1 332 aaPredicted RBP17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 PRRC2BQ5JSZ5 2229 aaKnown RBP17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 ABHD14A-ACY1A0A1B0GW23 586 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 TMEM110-MUSTN1A8MSY1 372 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 RFXAPO00287 272 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 UPP2O95045 317 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 FOSL2P15408 326 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 AARSP49588 968 aaKnown RBP eCLIP17.6■□□□□ 0.411e-9■■■■■ 87.3
CHMP1A-204ENST00000547687 FAM193AP78312 1265 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 TFAMQ00059 246 aaKnown RBP17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 DMTNQ08495 405 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 NCOA4Q13772 614 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 DUOXA2Q1HG44 320 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 CLEC16AQ2KHT3 1053 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 EMBQ6PCB8 327 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 IFT81Q8WYA0 676 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 SEPT8Q92599 483 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 ZNF653Q96CK0 615 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 CARD9Q9H257 536 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 GTF3C4Q9UKN8 822 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 PCDHB2Q9Y5E7 798 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 CITO14578 2027 aa17.6■□□□□ 0.41
CHMP1A-204ENST00000547687 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 LACTBL1A8MY62 500 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 ATMINO43313 823 aaPredicted RBP17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 CALCAP01258 141 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 CARSP49589 748 aaKnown RBP17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 MESDQ14696 234 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 FBXO47Q5MNV8 452 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 DCAF12L1Q5VU92 463 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 RPAINQ86UA6 219 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 ZNF677Q86XU0 584 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 RPS6KC1Q96S38 1066 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 NUP85Q9BW27 656 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 APOBEC3GQ9HC16 384 aaKnown RBP17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 MED4Q9NPJ6 270 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 TRIP11Q15643 1979 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 TMEM265A0A087WTH1 108 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 ZSCAN5CA6NGD5 496 aaPredicted RBP17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 MIF4GDA9UHW6 222 aaKnown RBP17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 IL18RAPO95256 599 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 NPTXRO95502 500 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 FGGP02679 453 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 TMEM191BP0C7N4 346 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 ITGA4P13612 1032 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 CD52P31358 61 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 CRYBB1P53674 252 aaPredicted RBP17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 PAK2Q13177 524 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 CUL2Q13617 745 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 PCBP1Q15365 356 aaKnown RBP eCLIP17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 SLC10A6Q3KNW5 377 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 UBL4BQ8N7F7 174 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 ZNF564Q8TBZ8 553 aaPredicted RBP17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 PHOSPHO2Q8TCD6 241 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 CAVIN3Q969G5 261 aa17.59■□□□□ 0.41
CHMP1A-204ENST00000547687 ESYT3A0FGR9 886 aa17.58■□□□□ 0.4
CHMP1A-204ENST00000547687 EPOPA6NHQ4 379 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms