RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 TXLNBQ8N3L3 684 aa17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 SLC4A11Q8NBS3 891 aa17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 WHAMMQ8TF30 809 aa17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 MRPL45Q9BRJ2 306 aaKnown RBP17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 ZNF518BQ9C0D4 1074 aa17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 PRO3102Q9H379 93 aa17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 LUC7LQ9NQ29 371 aaKnown RBP17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 DDX43Q9NXZ2 648 aaKnown RBP17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 MAFFQ9ULX9 164 aa17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 PCDHGC3Q9UN70 934 aa17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 PLXNA4Q9HCM2 1894 aa17.05■□□□□ 0.32
PRPF40A-212ENST00000545856 CYP26A1O43174 497 aa17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 IPO7O95373 1038 aaKnown RBP17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 LSM8O95777 96 aaKnown RBP17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 GLUD2P49448 558 aa17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 CDH8P55286 799 aa17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 SMAD3P84022 425 aaKnown RBP17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 CDR2Q01850 454 aa17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 DSG1Q02413 1049 aa17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 NFE2Q16621 373 aaPredicted RBP17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 SGO2Q562F6 1265 aa17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 TDRD12Q587J7 1177 aaKnown RBP17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 VARS2Q5ST30 1063 aaKnown RBP17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 PDE12Q6L8Q7 609 aaKnown RBP17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 DCP1BQ8IZD4 617 aaKnown RBP17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 B3GALNT2Q8NCR0 500 aa17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 C2orf15Q8WU43 125 aaKnown RBP17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 CCDC42Q96M95 316 aa17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 TGS1Q96RS0 853 aaKnown RBP17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.04■□□□□ 0.328e-7■■■■■ 72.3
PRPF40A-212ENST00000545856 CACNG4Q9UBN1 327 aa17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 NOCTQ9UK39 431 aaKnown RBP17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 CEP83Q9Y592 693 aa17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 IRAK3Q9Y616 596 aa17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 MYH10P35580 1976 aa17.04■□□□□ 0.32
PRPF40A-212ENST00000545856 FGF18O76093 207 aa17.03■□□□□ 0.32
PRPF40A-212ENST00000545856 URODP06132 367 aa17.03■□□□□ 0.32
PRPF40A-212ENST00000545856 SETSIPP0DME0 302 aa17.03■□□□□ 0.32
PRPF40A-212ENST00000545856 RAP1GAPP47736 663 aa17.03■□□□□ 0.32
PRPF40A-212ENST00000545856 ERVK-21P61565 698 aa17.03■□□□□ 0.32
PRPF40A-212ENST00000545856 CNGA2Q16280 664 aa17.03■□□□□ 0.32
PRPF40A-212ENST00000545856 INTS6LQ5JSJ4 861 aaKnown RBP17.03■□□□□ 0.32
PRPF40A-212ENST00000545856 C10orf76Q5T2E6 689 aa17.03■□□□□ 0.32
PRPF40A-212ENST00000545856 HASPINQ8TF76 798 aa17.03■□□□□ 0.32
PRPF40A-212ENST00000545856 FUBP3Q96I24 572 aaKnown RBP eCLIP17.03■□□□□ 0.32
PRPF40A-212ENST00000545856 SYT15Q9BQS2 421 aa17.03■□□□□ 0.32
PRPF40A-212ENST00000545856 SYT11Q9BT88 431 aa17.03■□□□□ 0.32
PRPF40A-212ENST00000545856 GPR62Q9BZJ7 368 aa17.03■□□□□ 0.32
PRPF40A-212ENST00000545856 ELOVL4Q9GZR5 314 aa17.03■□□□□ 0.32
PRPF40A-212ENST00000545856 LMAN2LQ9H0V9 348 aa17.03■□□□□ 0.32
PRPF40A-212ENST00000545856 DEF6Q9H4E7 631 aa17.03■□□□□ 0.32
PRPF40A-212ENST00000545856 HSFX1Q9UBD0 423 aa17.03■□□□□ 0.32
PRPF40A-212ENST00000545856 TMEM265A0A087WTH1 108 aa17.02■□□□□ 0.32
PRPF40A-212ENST00000545856 GZMAP12544 262 aa17.02■□□□□ 0.32
PRPF40A-212ENST00000545856 TKTP29401 623 aaKnown RBP17.02■□□□□ 0.32
PRPF40A-212ENST00000545856 CTNNB1P35222 781 aa17.02■□□□□ 0.32
PRPF40A-212ENST00000545856 E4F1Q66K89 784 aaPredicted RBP17.02■□□□□ 0.32
PRPF40A-212ENST00000545856 KIAA1841Q6NSI8 718 aa17.02■□□□□ 0.32
PRPF40A-212ENST00000545856 LCLAT1Q6UWP7 414 aa17.02■□□□□ 0.32
PRPF40A-212ENST00000545856 C4orf50Q6ZRC1 276 aa17.02■□□□□ 0.32
PRPF40A-212ENST00000545856 TMEM173Q86WV6 379 aaPredicted RBP17.02■□□□□ 0.32
PRPF40A-212ENST00000545856 TMEM139Q8IV31 216 aa17.02■□□□□ 0.32
PRPF40A-212ENST00000545856 MYCBPAPQ8TBZ2 947 aa17.02■□□□□ 0.32
PRPF40A-212ENST00000545856 ZNF606Q8WXB4 792 aa17.02■□□□□ 0.32
PRPF40A-212ENST00000545856 CEP295NLQ96MC4 621 aa17.02■□□□□ 0.32
PRPF40A-212ENST00000545856 LHX5Q9H2C1 402 aa17.02■□□□□ 0.32
PRPF40A-212ENST00000545856 HAUS4Q9H6D7 363 aa17.02■□□□□ 0.32
PRPF40A-212ENST00000545856 ABCB6Q9NP58 842 aa17.02■□□□□ 0.32
PRPF40A-212ENST00000545856 FNIP2Q9P278 1114 aa17.02■□□□□ 0.32
PRPF40A-212ENST00000545856 ARHGAP20Q9P2F6 1191 aa17.02■□□□□ 0.32
PRPF40A-212ENST00000545856 HCSTQ9UBK5 93 aa17.02■□□□□ 0.32
PRPF40A-212ENST00000545856 MTRRQ9UBK8 725 aa17.02■□□□□ 0.32
PRPF40A-212ENST00000545856 PATJQ8NI35 1801 aa17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 NT5C1B-RDH14C9J2C7 533 aa17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 RBAK-RBAKDNI3L0D1 243 aa17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 TBC1D4O60343 1298 aa17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 LCA5LO95447 670 aa17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 CTSAP10619 480 aa17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 CDH5P33151 784 aaPredicted RBP17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 SLC8A3P57103 927 aa17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 SNX16P57768 344 aa17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 SLC18A3Q16572 532 aa17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 SLC8B1Q6J4K2 584 aa17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 FAM171BQ6P995 826 aa17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 SLC47A2Q86VL8 602 aa17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 OSTM1Q86WC4 334 aa17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 TMEM130Q8N3G9 435 aa17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 MSANTD4Q8NCY6 345 aa17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 BCL7CQ8WUZ0 217 aaPredicted RBP17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 DDX1Q92499 740 aaKnown RBP17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 RABGGTAQ92696 567 aa17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 TRIM44Q96DX7 344 aaPredicted RBP17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 TWNKQ96RR1 684 aa17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 HNRNPABQ99729 332 aaKnown RBP17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 AGPAT1Q99943 283 aa17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 MIS12Q9H081 205 aa17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 NHEJ1Q9H9Q4 299 aaPredicted RBP17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 NGRNQ9NPE2 291 aaKnown RBP17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 CYLDQ9NQC7 956 aa17.02■□□□□ 0.31
PRPF40A-212ENST00000545856 RANBP2P49792 3224 aaKnown RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms