RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-223ENST00000545440 FNIP2Q9P278 1114 aa8.38□□□□□ -1.07
SNHG1-223ENST00000545440 ANKFY1Q9P2R3 1169 aa8.38□□□□□ -1.07
SNHG1-223ENST00000545440 CACNG4Q9UBN1 327 aa8.38□□□□□ -1.07
SNHG1-223ENST00000545440 CCDC39Q9UFE4 941 aa8.38□□□□□ -1.07
SNHG1-223ENST00000545440 MUTYHQ9UIF7 546 aa8.38□□□□□ -1.07
SNHG1-223ENST00000545440 ZNF638Q14966 1978 aaKnown RBP8.38□□□□□ -1.07
SNHG1-223ENST00000545440 NUP210Q8TEM1 1887 aaPredicted RBP8.38□□□□□ -1.07
SNHG1-223ENST00000545440 TRIOO75962 3097 aa8.38□□□□□ -1.07
SNHG1-223ENST00000545440 PTPRDP23468 1912 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 MUC6Q6W4X9 2439 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 NPHP3-ACAD11A0A0J9YXS1 232 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 SMIM28A0A1B0GU29 152 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 H3BM21 787 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 EREGO14944 169 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 HNRNPDLO14979 420 aaKnown RBP8.37□□□□□ -1.07
SNHG1-223ENST00000545440 CLDN3O15551 220 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 TADA2AO75478 443 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 PIGRP01833 764 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 KRT18P05783 430 aaKnown RBP8.37□□□□□ -1.07
SNHG1-223ENST00000545440 KCNE1P15382 129 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 MARCKSP29966 332 aaPredicted RBP8.37□□□□□ -1.07
SNHG1-223ENST00000545440 NRLP54845 237 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 CTBSQ01459 385 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 MCL1Q07820 350 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 SLC39A14Q15043 492 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 KYAT1Q16773 422 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 UPP1Q16831 310 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 RTP2Q5QGT7 225 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 ATAT1Q5SQI0 421 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 FAM173BQ6P4H8 233 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 CYP26C1Q6V0L0 522 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.37□□□□□ -1.07
SNHG1-223ENST00000545440 TAS1R1Q7RTX1 841 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 RAB44Q7Z6P3 723 aaPredicted RBP8.37□□□□□ -1.07
SNHG1-223ENST00000545440 GPR149Q86SP6 731 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 GALNT12Q8IXK2 581 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 HASPINQ8TF76 798 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 RIN2Q8WYP3 895 aaPredicted RBP8.37□□□□□ -1.07
SNHG1-223ENST00000545440 RABGGTAQ92696 567 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 BICD1Q96G01 975 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 EPSTI1Q96J88 318 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 RPGRIP1Q96KN7 1286 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 B3GALT6Q96L58 329 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 ACAP3Q96P50 834 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 TCHPQ9BT92 498 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 LRFN3Q9BTN0 628 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 TTPALQ9BTX7 342 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 APOL5Q9BWW9 433 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 ST6GALNAC4Q9H4F1 302 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 PLEKHA4Q9H4M7 779 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 ZFYVE1Q9HBF4 777 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 CDH22Q9UJ99 828 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 TBX20Q9UMR3 447 aa8.37□□□□□ -1.07
SNHG1-223ENST00000545440 FAM86C2PA6NEL3 165 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 TRAPPC3O43617 180 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 FAM189A1O60320 539 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 SIN3BO75182 1162 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 B3GAT3O94766 335 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 HSP90AA1P07900 732 aaKnown RBP8.36□□□□□ -1.07
SNHG1-223ENST00000545440 ARAFP10398 606 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 HARSP12081 509 aaKnown RBP8.36□□□□□ -1.07
SNHG1-223ENST00000545440 VAMP1P23763 118 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 GRNP28799 593 aaKnown RBP8.36□□□□□ -1.07
SNHG1-223ENST00000545440 DDIT3P35638 169 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 LIG4P49917 911 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 CLCNKBP51801 687 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 OSTNP61366 133 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 DAB2P98082 770 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 GTF2BQ00403 316 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 CEBPZQ03701 1054 aaKnown RBP8.36□□□□□ -1.07
SNHG1-223ENST00000545440 SOX4Q06945 474 aaPredicted RBP8.36□□□□□ -1.07
SNHG1-223ENST00000545440 DHX8Q14562 1220 aaKnown RBP8.36□□□□□ -1.07
SNHG1-223ENST00000545440 STK38Q15208 465 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 PSMD5Q16401 504 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.36□□□□□ -1.072e-12■■□□□ 11.6
SNHG1-223ENST00000545440 SPECC1Q5M775 1068 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 FAM171A1Q5VUB5 890 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 RRAGBQ5VZM2 374 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 DCLRE1AQ6PJP8 1040 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 TMC5Q6UXY8 1006 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 CCDC73Q6ZRK6 1079 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 CCDC149Q6ZUS6 474 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 USP49Q70CQ1 688 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 MAP4K3Q8IVH8 894 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 MYCT1Q8N699 235 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 C12orf76Q8N812 135 aaPredicted RBP8.36□□□□□ -1.07
SNHG1-223ENST00000545440 TDRD5Q8NAT2 981 aaKnown RBP8.36□□□□□ -1.07
SNHG1-223ENST00000545440 HVCN1Q96D96 273 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 ZBTB45Q96K62 511 aaPredicted RBP8.36□□□□□ -1.07
SNHG1-223ENST00000545440 ZNF396Q96N95 335 aaPredicted RBP8.36□□□□□ -1.07
SNHG1-223ENST00000545440 ZMAT2Q96NC0 199 aaKnown RBP8.36□□□□□ -1.07
SNHG1-223ENST00000545440 CLIC6Q96NY7 704 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 FIZ1Q96SL8 496 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 PLEKHA5Q9HAU0 1116 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 ZDHHC7Q9NXF8 308 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 SEL1LQ9UBV2 794 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 GDF2Q9UK05 429 aaPredicted RBP8.36□□□□□ -1.07
SNHG1-223ENST00000545440 FBXW11Q9UKB1 542 aa8.36□□□□□ -1.07
SNHG1-223ENST00000545440 GREB1Q4ZG55 1949 aa8.35□□□□□ -1.07
SNHG1-223ENST00000545440 C2CD4DB7Z1M9 353 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms