RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 KCNK3O14649 394 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 CETN3O15182 167 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 ATP9AO75110 1047 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 PHF2O75151 1096 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 ITGA2BP08514 1039 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 HARSP12081 509 aaKnown RBP5.55□□□□□ -1.52
USP28-213ENST00000544967 FCGRTP55899 365 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 CCNA1P78396 465 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 CREB5Q02930 508 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 CDK18Q07002 472 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 MCL1Q07820 350 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 EHHADHQ08426 723 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 MAPK7Q13164 816 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 KRT72Q14CN4 511 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 TRIM68Q6AZZ1 485 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 VSTM1Q6UX27 236 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 LRRC55Q6ZSA7 311 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 OTOP1Q7RTM1 612 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 GPR142Q7Z601 462 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 CTU1Q7Z7A3 348 aaKnown RBP5.55□□□□□ -1.52
USP28-213ENST00000544967 EXOC3L1Q86VI1 746 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 ECHDC2Q86YB7 292 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 APPL2Q8NEU8 664 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 ZFPM2Q8WW38 1151 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 TSG101Q99816 390 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 AZI2Q9H6S1 392 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 NRDE2Q9H7Z3 1164 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 PREBQ9HCU5 417 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 COMMD8Q9NX08 183 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 TUBGCP4Q9UGJ1 667 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 ZNHIT2Q9UHR6 403 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 MIF4GDA9UHW6 222 aaKnown RBP5.55□□□□□ -1.52
USP28-213ENST00000544967 TCP11X1B4DZS4 312 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 PRPF4O43172 522 aaKnown RBP eCLIP5.55□□□□□ -1.52
USP28-213ENST00000544967 MAGEC1O60732 1142 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 CCDC22O60826 627 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 ATP6V1G1O75348 118 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 STAM2O75886 525 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 EIF2S1P05198 315 aaKnown RBP5.55□□□□□ -1.52
USP28-213ENST00000544967 LYNP07948 512 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 ABHD2P08910 425 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 TROVE2P10155 538 aaKnown RBP eCLIP5.55□□□□□ -1.52
USP28-213ENST00000544967 CYP2C8P10632 490 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 GJA8P48165 433 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 HPCAP84074 193 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 IL9RQ01113 521 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 DR1Q01658 176 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 RCN2Q14257 317 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 SNX30Q5VWJ9 437 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 AAGABQ6PD74 315 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 FBXO46Q6PJ61 603 aaPredicted RBP5.55□□□□□ -1.52
USP28-213ENST00000544967 GADL1Q6ZQY3 521 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 NIPA1Q7RTP0 329 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 NT5DC3Q86UY8 548 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 TDRPQ86YL5 185 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 SAMD14Q8IZD0 417 aaPredicted RBP5.55□□□□□ -1.52
USP28-213ENST00000544967 SLAIN1Q8ND83 568 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 ERMNQ8TAM6 284 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 NAT14Q8WUY8 206 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 ART4Q93070 314 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 TBC1D10AQ9BXI6 508 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 GLT8D2Q9H1C3 349 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 FGFR1OP2Q9NVK5 253 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 BARHL2Q9NY43 387 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 UTP6Q9NYH9 597 aaKnown RBP5.55□□□□□ -1.52
USP28-213ENST00000544967 WHRNQ9P202 907 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 TBK1Q9UHD2 729 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 PADI4Q9UM07 663 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 Q9Y3F1 56 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 MAP3K13O43283 966 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 BUB1O43683 1085 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 CYP3A4P08684 503 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 CTNNA2P26232 953 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 CST5P28325 142 aaPredicted RBP5.55□□□□□ -1.52
USP28-213ENST00000544967 CASP1P29466 404 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 RGS19P49795 217 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 KLK7P49862 253 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 MAP2K5Q13163 448 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 PRKG1Q13976 671 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 MRPL58Q14197 206 aaKnown RBP5.55□□□□□ -1.52
USP28-213ENST00000544967 ARHGEF6Q15052 776 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 TRADDQ15628 312 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 ASIC2Q16515 512 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 IL17AQ16552 155 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 HSP90AA5PQ58FG0 334 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 CGB2Q6NT52 195 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 ERAP2Q6P179 960 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 MOXD1Q6UVY6 613 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 VPS36Q86VN1 386 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 TRPC4APQ8TEL6 797 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 MPP4Q96JB8 637 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 LRRC37BQ96QE4 947 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 FAM126AQ9BYI3 521 aaPredicted RBP5.55□□□□□ -1.52
USP28-213ENST00000544967 GRHL1Q9NZI5 618 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 THEGQ9P2T0 379 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 STK38LQ9Y2H1 464 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 ATP8A1Q9Y2Q0 1164 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 PCDHA3Q9Y5H8 950 aa5.55□□□□□ -1.52
USP28-213ENST00000544967 SCAMP3O14828 347 aaKnown RBP5.54□□□□□ -1.52
USP28-213ENST00000544967 ZNF862O60290 1169 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms