RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 INTS6LQ5JSJ4 861 aaKnown RBP13□□□□□ -0.33
DDX55-210ENST00000543016 PHLDB3Q6NSJ2 640 aa13□□□□□ -0.33
DDX55-210ENST00000543016 SARM1Q6SZW1 724 aa13□□□□□ -0.33
DDX55-210ENST00000543016 TMEM184AQ6ZMB5 413 aa13□□□□□ -0.33
DDX55-210ENST00000543016 FMNL3Q8IVF7 1028 aa13□□□□□ -0.33
DDX55-210ENST00000543016 CRYBG2Q8N1P7 616 aa13□□□□□ -0.33
DDX55-210ENST00000543016 AUTS2Q8WXX7 1259 aa13□□□□□ -0.33
DDX55-210ENST00000543016 GUCD1Q96NT3 240 aa13□□□□□ -0.33
DDX55-210ENST00000543016 MRPL45Q9BRJ2 306 aaKnown RBP13□□□□□ -0.33
DDX55-210ENST00000543016 NUP58Q9BVL2 599 aa13□□□□□ -0.33
DDX55-210ENST00000543016 NT5C1AQ9BXI3 368 aa13□□□□□ -0.33
DDX55-210ENST00000543016 EDEM3Q9BZQ6 932 aa13□□□□□ -0.33
DDX55-210ENST00000543016 PLEKHA4Q9H4M7 779 aa13□□□□□ -0.33
DDX55-210ENST00000543016 UBE2TQ9NPD8 197 aaPredicted RBP13□□□□□ -0.33
DDX55-210ENST00000543016 CISHQ9NSE2 258 aa13□□□□□ -0.33
DDX55-210ENST00000543016 AFF4Q9UHB7 1163 aaKnown RBP13□□□□□ -0.33
DDX55-210ENST00000543016 SIK3Q9Y2K2 1263 aa13□□□□□ -0.33
DDX55-210ENST00000543016 PRRC2BQ5JSZ5 2229 aaKnown RBP12.99□□□□□ -0.33
DDX55-210ENST00000543016 LRRN2O75325 713 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 CPB1P15086 417 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 CDH8P55286 799 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 ROR1Q01973 937 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 SYCP1Q15431 976 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 TCEAL5Q5H9L2 206 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 KLHDC7AQ5VTJ3 777 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 FAM171BQ6P995 826 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 LILRA6Q6PI73 481 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 C4orf50Q6ZRC1 276 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 CCDC149Q6ZUS6 474 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 Q7L0L9 218 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 OSTM1Q86WC4 334 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 EFHBQ8N7U6 833 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 NEK11Q8NG66 645 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 OR10T2Q8NGX3 314 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 SLC22A17Q8WUG5 538 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 CASP10Q92851 521 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 FUBP3Q96I24 572 aaKnown RBP eCLIP12.99□□□□□ -0.33
DDX55-210ENST00000543016 PCMTD1Q96MG8 357 aaPredicted RBP12.99□□□□□ -0.33
DDX55-210ENST00000543016 NAP1L5Q96NT1 182 aaPredicted RBP12.99□□□□□ -0.33
DDX55-210ENST00000543016 RTP3Q9BQQ7 232 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 SYT15Q9BQS2 421 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 LSM14BQ9BX40 385 aaKnown RBP12.99□□□□□ -0.33
DDX55-210ENST00000543016 STK33Q9BYT3 514 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 SDCBP2Q9H190 292 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 RBSNQ9H1K0 784 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 ABCB6Q9NP58 842 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 DZANK1Q9NVP4 752 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 CNTN6Q9UQ52 1028 aa12.99□□□□□ -0.33
DDX55-210ENST00000543016 VWA8A3KMH1 1905 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 PAEPP09466 180 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 ATF2P15336 505 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 UCHL3P15374 230 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 PTPN1P18031 435 aaKnown RBP12.98□□□□□ -0.33
DDX55-210ENST00000543016 LMO2P25791 158 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 ELF1P32519 619 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 NRIP1P48552 1158 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 TUFMP49411 452 aaKnown RBP12.98□□□□□ -0.33
DDX55-210ENST00000543016 CLCN4P51793 760 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 NDST1P52848 882 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 COL19A1Q14993 1142 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 FIGNQ5HY92 759 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 DPY19L2P1Q6NXN4 242 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 RSPO2Q6UXX9 243 aaPredicted RBP12.98□□□□□ -0.33
DDX55-210ENST00000543016 SCARA5Q6ZMJ2 495 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 RRAGAQ7L523 313 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 GAS2L3Q86XJ1 694 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 ARHGEF19Q8IW93 802 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 TCEAL8Q8IYN2 117 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 UBR7Q8N806 425 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 B3GALNT2Q8NCR0 500 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 MYCBPAPQ8TBZ2 947 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 SPPL2BQ8TCT7 592 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 MYLIPQ8WY64 445 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 CEP295NLQ96MC4 621 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 SIX2Q9NPC8 291 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.98□□□□□ -0.33
DDX55-210ENST00000543016 IFNKQ9P0W0 207 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 DNAJC12Q9UKB3 198 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 MYO6Q9UM54 1294 aa12.98□□□□□ -0.33
DDX55-210ENST00000543016 ATP8B3O60423 1300 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 COL4A4P53420 1690 aaPredicted RBP12.97□□□□□ -0.33
DDX55-210ENST00000543016 WDR27A2RRH5 827 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 TEX33O43247 280 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 TGM5O43548 720 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 PDGFRBP09619 1106 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 HOXB8P17481 243 aaPredicted RBP12.97□□□□□ -0.33
DDX55-210ENST00000543016 RPL17P18621 184 aaKnown RBP12.97□□□□□ -0.33
DDX55-210ENST00000543016 CD58P19256 250 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 ACO1P21399 889 aaKnown RBP12.97□□□□□ -0.33
DDX55-210ENST00000543016 HOXA9P31269 272 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 RAP1GAPP47736 663 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 BPIFB4P59827 614 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 HYAL1Q12794 435 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 PLD1Q13393 1074 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 KCNC3Q14003 757 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 STILQ15468 1287 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 CFAP221Q4G0U5 840 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 LIN9Q5TKA1 542 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 VSTM1Q6UX27 236 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 CYP26C1Q6V0L0 522 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms