RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 A8MXQ7 604 aa18.7■□□□□ 0.58
CLSTN3-210ENST00000540931 HOXB8P17481 243 aaPredicted RBP18.7■□□□□ 0.58
CLSTN3-210ENST00000540931 OR1D2P34982 312 aa18.7■□□□□ 0.58
CLSTN3-210ENST00000540931 IRS1P35568 1242 aa18.7■□□□□ 0.58
CLSTN3-210ENST00000540931 ASPAP45381 313 aa18.7■□□□□ 0.58
CLSTN3-210ENST00000540931 PRSS55Q6UWB4 352 aaPredicted RBP18.7■□□□□ 0.58
CLSTN3-210ENST00000540931 PPM1KQ8N3J5 372 aa18.7■□□□□ 0.58
CLSTN3-210ENST00000540931 SPPL2BQ8TCT7 592 aa18.7■□□□□ 0.58
CLSTN3-210ENST00000540931 FUBP3Q96I24 572 aaKnown RBP eCLIP18.7■□□□□ 0.58
CLSTN3-210ENST00000540931 CEP295NLQ96MC4 621 aa18.7■□□□□ 0.58
CLSTN3-210ENST00000540931 CLSTN3Q9BQT9 956 aa18.7■□□□□ 0.58
CLSTN3-210ENST00000540931 NT5C1AQ9BXI3 368 aa18.7■□□□□ 0.58
CLSTN3-210ENST00000540931 ABCB6Q9NP58 842 aa18.7■□□□□ 0.58
CLSTN3-210ENST00000540931 AFF4Q9UHB7 1163 aaKnown RBP18.7■□□□□ 0.58
CLSTN3-210ENST00000540931 TIMM13Q9Y5L4 95 aaPredicted RBP18.7■□□□□ 0.58
CLSTN3-210ENST00000540931 ATP8B3O60423 1300 aa18.7■□□□□ 0.58
CLSTN3-210ENST00000540931 TCF20Q9UGU0 1960 aaKnown RBP18.7■□□□□ 0.58
CLSTN3-210ENST00000540931 REV3LO60673 3130 aa18.69■□□□□ 0.58
CLSTN3-210ENST00000540931 PRRC2BQ5JSZ5 2229 aaKnown RBP18.69■□□□□ 0.58
CLSTN3-210ENST00000540931 A0A1B0GTH6 734 aa18.69■□□□□ 0.58
CLSTN3-210ENST00000540931 HIDE1A8MVS5 230 aa18.69■□□□□ 0.58
CLSTN3-210ENST00000540931 ABLIM3O94929 683 aa18.69■□□□□ 0.58
CLSTN3-210ENST00000540931 ATF2P15336 505 aa18.69■□□□□ 0.58
CLSTN3-210ENST00000540931 PON1P27169 355 aa18.69■□□□□ 0.58
CLSTN3-210ENST00000540931 PLA2G5P39877 138 aa18.69■□□□□ 0.58
CLSTN3-210ENST00000540931 NRIP1P48552 1158 aa18.69■□□□□ 0.58
CLSTN3-210ENST00000540931 TUFMP49411 452 aaKnown RBP18.69■□□□□ 0.58
CLSTN3-210ENST00000540931 UBASH3AP57075 661 aa18.69■□□□□ 0.58
CLSTN3-210ENST00000540931 PLD1Q13393 1074 aa18.69■□□□□ 0.58
CLSTN3-210ENST00000540931 LIN9Q5TKA1 542 aa18.69■□□□□ 0.58
CLSTN3-210ENST00000540931 PI4K2AQ9BTU6 479 aa18.69■□□□□ 0.58
CLSTN3-210ENST00000540931 ZCWPW1Q9H0M4 648 aa18.69■□□□□ 0.58
CLSTN3-210ENST00000540931 APOBEC3GQ9HC16 384 aaKnown RBP18.69■□□□□ 0.58
CLSTN3-210ENST00000540931 RTN4Q9NQC3 1192 aaKnown RBP18.69■□□□□ 0.58
CLSTN3-210ENST00000540931 CLASP2O75122 1294 aaKnown RBP18.68■□□□□ 0.58
CLSTN3-210ENST00000540931 ATP1A3P13637 1013 aa18.68■□□□□ 0.58
CLSTN3-210ENST00000540931 CLCN4P51793 760 aa18.68■□□□□ 0.58
CLSTN3-210ENST00000540931 FANCCQ00597 558 aa18.68■□□□□ 0.58
CLSTN3-210ENST00000540931 TFF2Q03403 129 aa18.68■□□□□ 0.58
CLSTN3-210ENST00000540931 STILQ15468 1287 aa18.68■□□□□ 0.58
CLSTN3-210ENST00000540931 TCEAL5Q5H9L2 206 aa18.68■□□□□ 0.58
CLSTN3-210ENST00000540931 INTS6LQ5JSJ4 861 aaKnown RBP18.68■□□□□ 0.58
CLSTN3-210ENST00000540931 CRYBG2Q8N1P7 616 aa18.68■□□□□ 0.58
CLSTN3-210ENST00000540931 KBTBD7Q8WVZ9 684 aa18.68■□□□□ 0.58
CLSTN3-210ENST00000540931 PABPC5Q96DU9 382 aaKnown RBP18.68■□□□□ 0.58
CLSTN3-210ENST00000540931 FAM84AQ96KN4 292 aa18.68■□□□□ 0.58
CLSTN3-210ENST00000540931 B3GALT6Q96L58 329 aa18.68■□□□□ 0.58
CLSTN3-210ENST00000540931 PCMTD1Q96MG8 357 aaPredicted RBP18.68■□□□□ 0.58
CLSTN3-210ENST00000540931 SYT15Q9BQS2 421 aa18.68■□□□□ 0.58
CLSTN3-210ENST00000540931 NUP58Q9BVL2 599 aa18.68■□□□□ 0.58
CLSTN3-210ENST00000540931 COG5Q9UP83 839 aa18.68■□□□□ 0.58
CLSTN3-210ENST00000540931 XIRP2A4UGR9 3374 aa18.68■□□□□ 0.58
CLSTN3-210ENST00000540931 CILPO75339 1184 aa18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 PAEPP09466 180 aa18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 HNRNPA1P09651 372 aaKnown RBP eCLIP18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 CCDC172P0C7W6 258 aa18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 IGFBP6P24592 240 aaPredicted RBP18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 HOXA9P31269 272 aa18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 BPIFB4P59827 614 aa18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 ROR1Q01973 937 aa18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 SPOPLQ6IQ16 392 aa18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 LILRA6Q6PI73 481 aa18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 TCEAL8Q8IYN2 117 aa18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 NEK11Q8NG66 645 aa18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 MYCBPAPQ8TBZ2 947 aa18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 AUTS2Q8WXX7 1259 aa18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 CRACR2AQ9BSW2 395 aa18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 RHOBTB2Q9BYZ6 727 aa18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 EDEM3Q9BZQ6 932 aa18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 SMYD3Q9H7B4 428 aa18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 UBE2TQ9NPD8 197 aaPredicted RBP18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 CISHQ9NSE2 258 aa18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 ZDHHC7Q9NXF8 308 aa18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 POLIQ9UNA4 740 aa18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 PCDHB5Q9Y5E4 795 aa18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 TRANK1O15050 2925 aa18.67■□□□□ 0.58
CLSTN3-210ENST00000540931 VWA8A3KMH1 1905 aa18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 SPDYE4A6NLX3 237 aa18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 POU2F2P09086 479 aa18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 WEE2P0C1S8 567 aa18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 PTPN1P18031 435 aaKnown RBP18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 SLC9A1P19634 815 aa18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 SLC8A3P57103 927 aa18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 ADAM15Q13444 863 aa18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 COL19A1Q14993 1142 aa18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 NR1I3Q14994 352 aa18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 AAK1Q2M2I8 961 aa18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 CFAP221Q4G0U5 840 aa18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 KLHDC7AQ5VTJ3 777 aa18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 FAM171BQ6P995 826 aa18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 VSTM1Q6UX27 236 aa18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 SCARA5Q6ZMJ2 495 aa18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 APTXQ7Z2E3 356 aaKnown RBP18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 RBM23Q86U06 439 aaKnown RBP18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 SPATA2LQ8IUW3 424 aaPredicted RBP18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 MICALL1Q8N3F8 863 aa18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 B3GALNT2Q8NCR0 500 aa18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 SLC22A17Q8WUG5 538 aa18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 TATDN2Q93075 761 aa18.66■□□□□ 0.58
CLSTN3-210ENST00000540931 MRPL45Q9BRJ2 306 aaKnown RBP18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms