RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 PDGFBP01127 241 aaPredicted RBP15.24■□□□□ 0.03
USP28-209ENST00000540925 C4BPAP04003 597 aaKnown RBP15.24■□□□□ 0.03
USP28-209ENST00000540925 ATF6P18850 670 aa15.24■□□□□ 0.03
USP28-209ENST00000540925 PLD1Q13393 1074 aa15.24■□□□□ 0.03
USP28-209ENST00000540925 TDRD10Q5VZ19 366 aaKnown RBP15.24■□□□□ 0.03
USP28-209ENST00000540925 ADGRF2Q8IZF7 708 aa15.24■□□□□ 0.03
USP28-209ENST00000540925 FBXL6Q8N531 539 aa15.24■□□□□ 0.03
USP28-209ENST00000540925 SPPL2BQ8TCT7 592 aa15.24■□□□□ 0.03
USP28-209ENST00000540925 TMC2Q8TDI7 906 aa15.24■□□□□ 0.03
USP28-209ENST00000540925 ING5Q8WYH8 240 aa15.24■□□□□ 0.03
USP28-209ENST00000540925 PSMG2Q969U7 264 aa15.24■□□□□ 0.03
USP28-209ENST00000540925 CCDC47Q96A33 483 aaKnown RBP15.24■□□□□ 0.03
USP28-209ENST00000540925 PBXIP1Q96AQ6 731 aa15.24■□□□□ 0.03
USP28-209ENST00000540925 ZNF512Q96ME7 567 aaPredicted RBP15.24■□□□□ 0.03
USP28-209ENST00000540925 GSDMAQ96QA5 445 aa15.24■□□□□ 0.03
USP28-209ENST00000540925 SLC2A4RGQ9NR83 387 aa15.24■□□□□ 0.03
USP28-209ENST00000540925 DDX43Q9NXZ2 648 aaKnown RBP15.24■□□□□ 0.03
USP28-209ENST00000540925 MAPK8IP1Q9UQF2 711 aa15.24■□□□□ 0.03
USP28-209ENST00000540925 ASB3Q9Y575 518 aa15.24■□□□□ 0.03
USP28-209ENST00000540925 GOLGA6L4A6NEF3 574 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 ZNF197O14709 1029 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 CALUO43852 315 aaPredicted RBP15.23■□□□□ 0.03
USP28-209ENST00000540925 AKAP3O75969 853 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 VNN1O95497 513 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 FAM163BP0C2L3 166 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 HAPLN1P10915 354 aaPredicted RBP15.23■□□□□ 0.03
USP28-209ENST00000540925 SRFP11831 508 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 WARSP23381 471 aaKnown RBP15.23■□□□□ 0.03
USP28-209ENST00000540925 FCARP24071 287 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 LHX1P48742 406 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 TUFMP49411 452 aaKnown RBP15.23■□□□□ 0.03
USP28-209ENST00000540925 AP3M2P53677 418 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 EPHB3P54753 998 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 DLG4P78352 724 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 ENPEPQ07075 957 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 CCDC142Q17RM4 750 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 INTS6LQ5JSJ4 861 aaKnown RBP15.23■□□□□ 0.03
USP28-209ENST00000540925 IQCEQ6IPM2 695 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 FAM171BQ6P995 826 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 MTSS1LQ765P7 747 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 SMYD4Q8IYR2 804 aaPredicted RBP15.23■□□□□ 0.03
USP28-209ENST00000540925 DCP1BQ8IZD4 617 aaKnown RBP15.23■□□□□ 0.03
USP28-209ENST00000540925 ELMOD1Q8N336 334 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 SHKBP1Q8TBC3 707 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 CCDC34Q96HJ3 373 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 ZNF334Q9HCZ1 680 aaPredicted RBP15.23■□□□□ 0.03
USP28-209ENST00000540925 ABCB6Q9NP58 842 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 ASAH2Q9NR71 780 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 NME7Q9Y5B8 376 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 PCDHA5Q9Y5H7 936 aa15.23■□□□□ 0.03
USP28-209ENST00000540925 IKBKBO14920 756 aa15.22■□□□□ 0.03
USP28-209ENST00000540925 GADD45BO75293 160 aaPredicted RBP15.22■□□□□ 0.03
USP28-209ENST00000540925 TACC1O75410 805 aa15.22■□□□□ 0.03
USP28-209ENST00000540925 ECI2O75521 394 aa15.22■□□□□ 0.03
USP28-209ENST00000540925 NPR3P17342 541 aa15.22■□□□□ 0.03
USP28-209ENST00000540925 NR2F2P24468 414 aa15.22■□□□□ 0.03
USP28-209ENST00000540925 ACAT1P24752 427 aaKnown RBP15.22■□□□□ 0.03
USP28-209ENST00000540925 LMO2P25791 158 aa15.22■□□□□ 0.03
USP28-209ENST00000540925 ATICP31939 592 aa15.22■□□□□ 0.03
USP28-209ENST00000540925 ALDH1A3P47895 512 aa15.22■□□□□ 0.03
USP28-209ENST00000540925 MYL6P60660 151 aa15.22■□□□□ 0.03
USP28-209ENST00000540925 MYL7Q01449 175 aa15.22■□□□□ 0.03
USP28-209ENST00000540925 TSPY1Q01534 308 aa15.22■□□□□ 0.03
USP28-209ENST00000540925 NFE2Q16621 373 aaPredicted RBP15.22■□□□□ 0.03
USP28-209ENST00000540925 EDRF1Q3B7T1 1238 aa15.22■□□□□ 0.03
USP28-209ENST00000540925 ZACNQ401N2 412 aa15.22■□□□□ 0.03
USP28-209ENST00000540925 CFAP221Q4G0U5 840 aa15.22■□□□□ 0.03
USP28-209ENST00000540925 CYP4A22Q5TCH4 519 aa15.22■□□□□ 0.03
USP28-209ENST00000540925 ZNF658Q5TYW1 1059 aaPredicted RBP15.22■□□□□ 0.03
USP28-209ENST00000540925 GAREM2Q75VX8 874 aa15.22■□□□□ 0.03
USP28-209ENST00000540925 PDZD4Q76G19 769 aaPredicted RBP15.22■□□□□ 0.03
USP28-209ENST00000540925 DNAJB7Q7Z6W7 309 aaPredicted RBP15.22■□□□□ 0.03
USP28-209ENST00000540925 ZC3H3Q8IXZ2 948 aaKnown RBP15.22■□□□□ 0.03
USP28-209ENST00000540925 ST13P5Q8NFI4 369 aaPredicted RBP15.22■□□□□ 0.03
USP28-209ENST00000540925 ZSWIM3Q96MP5 696 aa15.22■□□□□ 0.03
USP28-209ENST00000540925 TRPV4Q9HBA0 871 aa15.22■□□□□ 0.03
USP28-209ENST00000540925 IL21Q9HBE4 155 aa15.22■□□□□ 0.03
USP28-209ENST00000540925 WNT16Q9UBV4 365 aa15.22■□□□□ 0.03
USP28-209ENST00000540925 PCDHB5Q9Y5E4 795 aa15.22■□□□□ 0.03
USP28-209ENST00000540925 MYBPHLA2RUH7 354 aa15.21■□□□□ 0.03
USP28-209ENST00000540925 HMGA1P17096 107 aaKnown RBP15.21■□□□□ 0.03
USP28-209ENST00000540925 PCSK1P29120 753 aa15.21■□□□□ 0.03
USP28-209ENST00000540925 PRCPP42785 496 aa15.21■□□□□ 0.03
USP28-209ENST00000540925 CDR1P51861 262 aa15.21■□□□□ 0.03
USP28-209ENST00000540925 FAM78AQ5JUQ0 283 aa15.21■□□□□ 0.03
USP28-209ENST00000540925 ERCC4Q92889 916 aaPredicted RBP15.21■□□□□ 0.03
USP28-209ENST00000540925 MCRS1Q96EZ8 462 aa15.21■□□□□ 0.03
USP28-209ENST00000540925 ASB16Q96NS5 453 aa15.21■□□□□ 0.03
USP28-209ENST00000540925 SEPT5Q99719 369 aaPredicted RBP15.21■□□□□ 0.03
USP28-209ENST00000540925 LPIN3Q9BQK8 851 aa15.21■□□□□ 0.03
USP28-209ENST00000540925 MKNK1Q9BUB5 465 aa15.21■□□□□ 0.03
USP28-209ENST00000540925 KCNH6Q9H252 994 aa15.21■□□□□ 0.03
USP28-209ENST00000540925 CRTAC1Q9NQ79 661 aa15.21■□□□□ 0.03
USP28-209ENST00000540925 RMND1Q9NWS8 449 aa15.21■□□□□ 0.03
USP28-209ENST00000540925 CHMP5Q9NZZ3 219 aa15.21■□□□□ 0.03
USP28-209ENST00000540925 PTPRDP23468 1912 aa15.2■□□□□ 0.02
USP28-209ENST00000540925 KRBA1A5PL33 1030 aa15.2■□□□□ 0.02
USP28-209ENST00000540925 TULP1O00294 542 aaPredicted RBP15.2■□□□□ 0.02
USP28-209ENST00000540925 VCPP55072 806 aaKnown RBP15.2■□□□□ 0.02
USP28-209ENST00000540925 NCOA4Q13772 614 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms