RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 FIS1Q9Y3D6 152 aa14.91□□□□□ -0.02
COLCA1-204ENST00000540738 SYN2Q92777 582 aaPredicted RBP14.9□□□□□ -0.02
COLCA1-204ENST00000540738 XPO6Q96QU8 1125 aaKnown RBP14.9□□□□□ -0.02
COLCA1-204ENST00000540738 CNOT10Q9H9A5 744 aaKnown RBP14.9□□□□□ -0.02
COLCA1-204ENST00000540738 KBTBD4Q9NVX7 518 aa14.9□□□□□ -0.02
COLCA1-204ENST00000540738 RRN3Q9NYV6 651 aa14.9□□□□□ -0.02
COLCA1-204ENST00000540738 UBIAD1Q9Y5Z9 338 aa14.9□□□□□ -0.02
COLCA1-204ENST00000540738 SLC12A8A0AV02 714 aa14.9□□□□□ -0.02
COLCA1-204ENST00000540738 BST2Q10589 180 aaKnown RBP14.9□□□□□ -0.02
COLCA1-204ENST00000540738 IMPG1Q17R60 797 aa14.9□□□□□ -0.02
COLCA1-204ENST00000540738 MDH1BQ5I0G3 518 aa14.9□□□□□ -0.02
COLCA1-204ENST00000540738 EMBQ6PCB8 327 aa14.9□□□□□ -0.02
COLCA1-204ENST00000540738 CLEC17AQ6ZS10 378 aa14.9□□□□□ -0.02
COLCA1-204ENST00000540738 RASSF3Q86WH2 238 aa14.9□□□□□ -0.02
COLCA1-204ENST00000540738 ATL2Q8NHH9 583 aa14.9□□□□□ -0.02
COLCA1-204ENST00000540738 GAS2L1Q99501 681 aaPredicted RBP14.9□□□□□ -0.02
COLCA1-204ENST00000540738 ELOVL4Q9GZR5 314 aa14.9□□□□□ -0.02
COLCA1-204ENST00000540738 METTL5Q9NRN9 209 aaKnown RBP14.9□□□□□ -0.02
COLCA1-204ENST00000540738 ZDHHC9Q9Y397 364 aa14.9□□□□□ -0.02
COLCA1-204ENST00000540738 A0A1W2PQJ5 194 aa14.9□□□□□ -0.02
COLCA1-204ENST00000540738 SLITRK3O94933 977 aa14.9□□□□□ -0.02
COLCA1-204ENST00000540738 SNF8Q96H20 258 aa14.9□□□□□ -0.02
COLCA1-204ENST00000540738 GPR63Q9BZJ6 419 aa14.9□□□□□ -0.02
COLCA1-204ENST00000540738 TBK1Q9UHD2 729 aa14.9□□□□□ -0.02
COLCA1-204ENST00000540738 ACADMP11310 421 aa14.9□□□□□ -0.02
COLCA1-204ENST00000540738 PPIGQ13427 754 aaKnown RBP eCLIP14.9□□□□□ -0.02
COLCA1-204ENST00000540738 NAB2Q15742 525 aa14.9□□□□□ -0.02
COLCA1-204ENST00000540738 TRIM45Q9H8W5 580 aaPredicted RBP14.9□□□□□ -0.02
COLCA1-204ENST00000540738 CCDC160A6NGH7 325 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 ATP9BO43861 1147 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 SUN1O94901 812 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 PPARDQ03181 441 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 DHX34Q14147 1143 aaKnown RBP14.89□□□□□ -0.03
COLCA1-204ENST00000540738 SKA1Q96BD8 255 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 VPS11Q9H270 941 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 ATXN3LQ9H3M9 355 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 HIPK3Q9H422 1215 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 FAM96AQ9H5X1 160 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 TMEM134Q9H6X4 195 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 PARP4Q9UKK3 1724 aaKnown RBP14.89□□□□□ -0.03
COLCA1-204ENST00000540738 ACSL3O95573 720 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 HSPA4LO95757 839 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 TMEM253P0C7T8 217 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 TAL1P17542 331 aaPredicted RBP14.89□□□□□ -0.03
COLCA1-204ENST00000540738 GNGT1P63211 74 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 EFEMP1Q12805 493 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 MTHFD1LQ6UB35 978 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 LBX2Q6XYB7 198 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 C1orf131Q8NDD1 294 aaKnown RBP14.89□□□□□ -0.03
COLCA1-204ENST00000540738 CYP2W1Q8TAV3 490 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 TMEM176AQ96HP8 235 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 HINFPQ9BQA5 517 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 FRMPD4Q14CM0 1322 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 WTIPA6NIX2 430 aaPredicted RBP14.89□□□□□ -0.03
COLCA1-204ENST00000540738 ELNP15502 786 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 AKAP5P24588 427 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 COPS2P61201 443 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 PTK2BQ14289 1009 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 CALML6Q8TD86 181 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 SLC28A3Q9HAS3 691 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.89□□□□□ -0.03
COLCA1-204ENST00000540738 AFF4Q9UHB7 1163 aaKnown RBP14.89□□□□□ -0.03
COLCA1-204ENST00000540738 SF3B1O75533 1304 aaKnown RBP eCLIP14.89□□□□□ -0.03
COLCA1-204ENST00000540738 FZD9O00144 591 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 NFKBIEO00221 500 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 TLL1O43897 1013 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 NDUFS3O75489 264 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 PHEXP78562 749 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 CCDC137Q6PK04 289 aaKnown RBP14.89□□□□□ -0.03
COLCA1-204ENST00000540738 USP33Q8TEY7 942 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 ARHGEF26Q96DR7 871 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 TMEM117Q9H0C3 514 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 PKP3Q9Y446 797 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 SIGLEC1Q9BZZ2 1709 aa14.89□□□□□ -0.03
COLCA1-204ENST00000540738 CSDE1O75534 798 aaKnown RBP14.88□□□□□ -0.03
COLCA1-204ENST00000540738 CRYBB1P53674 252 aaPredicted RBP14.88□□□□□ -0.03
COLCA1-204ENST00000540738 SLC35G2Q8TBE7 412 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 PORCNQ9H237 461 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 KIF3CO14782 793 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 ITGA7Q13683 1181 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 ABRAQ8N0Z2 381 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 COPS5Q92905 334 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 TSPAN17Q96FV3 270 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 SMARCD1Q96GM5 515 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 DCLK3Q9C098 648 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 INTS13Q9NVM9 706 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 ADAMTSL3P82987 1691 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 SPATA31C2B4DYI2 1134 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 GOLGA8MH3BSY2 632 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 SMAPO00193 183 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 SLC9A3R1O14745 358 aaPredicted RBP14.88□□□□□ -0.03
COLCA1-204ENST00000540738 SMIM24O75264 130 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 DUSP11O75319 330 aaKnown RBP14.88□□□□□ -0.03
COLCA1-204ENST00000540738 LSM8O95777 96 aaKnown RBP14.88□□□□□ -0.03
COLCA1-204ENST00000540738 ADH1AP07327 375 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 FGFR4P22455 802 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 CTCFP49711 727 aaPredicted RBP14.88□□□□□ -0.03
COLCA1-204ENST00000540738 ALS2CLQ60I27 953 aa14.88□□□□□ -0.03
COLCA1-204ENST00000540738 TBC1D1Q86TI0 1168 aaPredicted RBP14.88□□□□□ -0.03
COLCA1-204ENST00000540738 OOSP2Q86WS3 158 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms