RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 UBE3AQ05086 875 aa11.26□□□□□ -0.61
VPS33A-204ENST00000540669 ASTE1Q2TB18 679 aaPredicted RBP11.26□□□□□ -0.61
VPS33A-204ENST00000540669 PKDCCQ504Y2 493 aa11.26□□□□□ -0.61
VPS33A-204ENST00000540669 VARS2Q5ST30 1063 aaKnown RBP11.26□□□□□ -0.61
VPS33A-204ENST00000540669 SLC8B1Q6J4K2 584 aa11.26□□□□□ -0.61
VPS33A-204ENST00000540669 TAS1R1Q7RTX1 841 aa11.26□□□□□ -0.61
VPS33A-204ENST00000540669 FMNL3Q8IVF7 1028 aa11.26□□□□□ -0.61
VPS33A-204ENST00000540669 DRC7Q8IY82 874 aa11.26□□□□□ -0.61
VPS33A-204ENST00000540669 DEFB123Q8N688 67 aa11.26□□□□□ -0.61
VPS33A-204ENST00000540669 RBBP8NLQ8NC74 664 aaPredicted RBP11.26□□□□□ -0.61
VPS33A-204ENST00000540669 APPL2Q8NEU8 664 aa11.26□□□□□ -0.61
VPS33A-204ENST00000540669 LRCH3Q96II8 777 aa11.26□□□□□ -0.61
VPS33A-204ENST00000540669 C17orf80Q9BSJ5 609 aa11.26□□□□□ -0.61
VPS33A-204ENST00000540669 AAASQ9NRG9 546 aa11.26□□□□□ -0.61
VPS33A-204ENST00000540669 NXF1Q9UBU9 619 aaKnown RBP11.26□□□□□ -0.61
VPS33A-204ENST00000540669 LUC7L2Q9Y383 392 aaKnown RBP11.26□□□□□ -0.61
VPS33A-204ENST00000540669 BACE2Q9Y5Z0 518 aa11.26□□□□□ -0.61
VPS33A-204ENST00000540669 AKR1B15C9JRZ8 316 aaPredicted RBP11.25□□□□□ -0.61
VPS33A-204ENST00000540669 O00370 1275 aa11.25□□□□□ -0.61
VPS33A-204ENST00000540669 HCRTO43612 131 aa11.25□□□□□ -0.61
VPS33A-204ENST00000540669 HUS1O60921 280 aa11.25□□□□□ -0.61
VPS33A-204ENST00000540669 VNN2O95498 520 aa11.25□□□□□ -0.61
VPS33A-204ENST00000540669 FERP16591 822 aa11.25□□□□□ -0.61
VPS33A-204ENST00000540669 ANXA13P27216 316 aa11.25□□□□□ -0.61
VPS33A-204ENST00000540669 CDH5P33151 784 aaPredicted RBP11.25□□□□□ -0.61
VPS33A-204ENST00000540669 LHX1P48742 406 aa11.25□□□□□ -0.61
VPS33A-204ENST00000540669 NDST1P52848 882 aa11.25□□□□□ -0.61
VPS33A-204ENST00000540669 GSDMDP57764 484 aa11.25□□□□□ -0.61
VPS33A-204ENST00000540669 CCDC173Q0VFZ6 552 aa11.25□□□□□ -0.61
VPS33A-204ENST00000540669 PTPN14Q15678 1187 aa11.25□□□□□ -0.61
VPS33A-204ENST00000540669 CCDC142Q17RM4 750 aa11.25□□□□□ -0.61
VPS33A-204ENST00000540669 ARHGAP17Q68EM7 881 aa11.25□□□□□ -0.61
VPS33A-204ENST00000540669 FAM171BQ6P995 826 aa11.25□□□□□ -0.61
VPS33A-204ENST00000540669 RSPO2Q6UXX9 243 aaPredicted RBP11.25□□□□□ -0.61
VPS33A-204ENST00000540669 KLHL23Q8NBE8 558 aa11.25□□□□□ -0.61
VPS33A-204ENST00000540669 LNX1Q8TBB1 728 aaPredicted RBP11.25□□□□□ -0.61
VPS33A-204ENST00000540669 TFAP2BQ92481 460 aa11.25□□□□□ -0.61
VPS33A-204ENST00000540669 TMEM169Q96HH4 297 aa11.25□□□□□ -0.61
VPS33A-204ENST00000540669 PHF12Q96QT6 1004 aa11.25□□□□□ -0.61
VPS33A-204ENST00000540669 TGS1Q96RS0 853 aaKnown RBP11.25□□□□□ -0.61
VPS33A-204ENST00000540669 ACBD6Q9BR61 282 aa11.25□□□□□ -0.61
VPS33A-204ENST00000540669 OXCT2Q9BYC2 517 aaPredicted RBP11.25□□□□□ -0.61
VPS33A-204ENST00000540669 RXFP1Q9HBX9 757 aa11.25□□□□□ -0.61
VPS33A-204ENST00000540669 CRTAC1Q9NQ79 661 aa11.25□□□□□ -0.61
VPS33A-204ENST00000540669 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.25□□□□□ -0.612e-6■■■■■ 149.1
VPS33A-204ENST00000540669 ARHGAP20Q9P2F6 1191 aa11.25□□□□□ -0.61
VPS33A-204ENST00000540669 MTCL1Q9Y4B5 1905 aaKnown RBP11.25□□□□□ -0.61
VPS33A-204ENST00000540669 MYO7AQ13402 2215 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 SSU72P8A0A1W2PR75 194 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 H3BNC9 293 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 TADA2AO75478 443 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 PAPLNO95428 1278 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 C1RP00736 705 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 CTSAP10619 480 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 CHRNB2P17787 502 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 DNAJB1P25685 340 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 LMO2P25791 158 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 CTNNB1P35222 781 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 STAT1P42224 750 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 CCZ1BP86790 482 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 CCZ1P86791 482 aaPredicted RBP11.24□□□□□ -0.61
VPS33A-204ENST00000540669 GOLGA8FQ08AF8 430 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 GOLGA8DPQ0D2H9 430 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 RAPGEF1Q13905 1077 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 ARHGAP44Q17R89 818 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 USP41Q3LFD5 358 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 INTS6LQ5JSJ4 861 aaKnown RBP11.24□□□□□ -0.61
VPS33A-204ENST00000540669 FAM171A1Q5VUB5 890 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 OVOS1Q6IE37 1185 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 TMEM270Q6UE05 265 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 PAQR9Q6ZVX9 377 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 CACNA2D4Q7Z3S7 1137 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 NOP9Q86U38 636 aaKnown RBP11.24□□□□□ -0.61
VPS33A-204ENST00000540669 ZNF677Q86XU0 584 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 OR8K1Q8NGG5 319 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 SPPL3Q8TCT6 385 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 SPAG5Q96R06 1193 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 TTPALQ9BTX7 342 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 NT5C1AQ9BXI3 368 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 ZCWPW1Q9H0M4 648 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 DPEP3Q9H4B8 488 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 ZNF576Q9H609 170 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 ACP6Q9NPH0 428 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 FNIP2Q9P278 1114 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 PCDHGC3Q9UN70 934 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 PCDHB12Q9Y5F1 795 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 ATP8B3O60423 1300 aa11.24□□□□□ -0.61
VPS33A-204ENST00000540669 OR6C75A6NL08 312 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 SOX1O00570 391 aaPredicted RBP11.23□□□□□ -0.61
VPS33A-204ENST00000540669 CYP26A1O43174 497 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 MAP3K13O43283 966 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 LPXNO60711 386 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 GFPT2O94808 682 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 LCA5LO95447 670 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 CYP11B1P15538 503 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 CD58P19256 250 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 PCSK1P29120 753 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 RPL34P49207 117 aaKnown RBP11.23□□□□□ -0.61
VPS33A-204ENST00000540669 GLUD2P49448 558 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 ADKP55263 362 aaKnown RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms