RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 NIFKQ9BYG3 293 aaKnown RBP17.86■□□□□ 0.45
USP28-208ENST00000540438 KIAA1586Q9HCI6 787 aa17.86■□□□□ 0.45
USP28-208ENST00000540438 OGTO15294 1046 aa17.86■□□□□ 0.45
USP28-208ENST00000540438 PMM2O15305 246 aa17.86■□□□□ 0.45
USP28-208ENST00000540438 ADCYAP1R1P41586 468 aa17.86■□□□□ 0.45
USP28-208ENST00000540438 KLF1Q13351 362 aaPredicted RBP17.86■□□□□ 0.45
USP28-208ENST00000540438 PLEKHA7Q6IQ23 1121 aa17.86■□□□□ 0.45
USP28-208ENST00000540438 RIOX2Q8IUF8 465 aa17.86■□□□□ 0.45
USP28-208ENST00000540438 ARFGAP1Q8N6T3 406 aa17.86■□□□□ 0.45
USP28-208ENST00000540438 DNERQ8NFT8 737 aa17.86■□□□□ 0.45
USP28-208ENST00000540438 HEXIM2Q96MH2 286 aaKnown RBP17.86■□□□□ 0.45
USP28-208ENST00000540438 NIF3L1Q9GZT8 377 aa17.86■□□□□ 0.45
USP28-208ENST00000540438 ABCF3Q9NUQ8 709 aa17.86■□□□□ 0.45
USP28-208ENST00000540438 STYXL1Q9Y6J8 313 aa17.86■□□□□ 0.45
USP28-208ENST00000540438 TMEM191CA6NGB0 347 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 EIF3BP55884 814 aaKnown RBP17.85■□□□□ 0.45
USP28-208ENST00000540438 PPP2R5EQ16537 467 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 ANKRD22Q5VYY1 191 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 KCNV1Q6PIU1 500 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 C1orf127Q8N9H9 656 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 VTI1AQ96AJ9 217 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 SLITRK1Q96PX8 696 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 FAM129AQ9BZQ8 928 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 CDT1Q9H211 546 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 CD248Q9HCU0 757 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 MRPL47Q9HD33 250 aaKnown RBP17.85■□□□□ 0.45
USP28-208ENST00000540438 SIX4Q9UIU6 781 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 NAALADL1Q9UQQ1 740 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 TCRBV7S3A2A0A539 114 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 PPEF2O14830 753 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 CST8O60676 142 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 TTC4O95801 387 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 ASPAP45381 313 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 RTP1P59025 263 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 SLMAPQ14BN4 828 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 C6orf118Q5T5N4 469 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 SESTD1Q86VW0 696 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 GPC2Q8N158 579 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 AFG1LQ8WV93 481 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 MRPL42Q9Y6G3 142 aaKnown RBP17.85■□□□□ 0.45
USP28-208ENST00000540438 LDHAP00338 332 aaKnown RBP17.85■□□□□ 0.45
USP28-208ENST00000540438 KRT3P12035 628 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 SSTR1P30872 391 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 POLR2BP30876 1174 aaKnown RBP17.85■□□□□ 0.45
USP28-208ENST00000540438 MMP13P45452 471 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 DRG2P55039 364 aaKnown RBP17.85■□□□□ 0.45
USP28-208ENST00000540438 CLDN10P78369 228 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 CCDC142Q17RM4 750 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 KIZQ2M2Z5 673 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 PRAMEF19Q5SWL8 479 aa17.85■□□□□ 0.45
USP28-208ENST00000540438 EIF1ADQ8N9N8 165 aaKnown RBP17.85■□□□□ 0.45
USP28-208ENST00000540438 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.85■□□□□ 0.45
USP28-208ENST00000540438 M0QYV0 167 aa17.84■□□□□ 0.45
USP28-208ENST00000540438 ATP2A1O14983 1001 aa17.84■□□□□ 0.45
USP28-208ENST00000540438 YY1P25490 414 aa17.84■□□□□ 0.45
USP28-208ENST00000540438 RABGGTBP53611 331 aa17.84■□□□□ 0.45
USP28-208ENST00000540438 CNGA2Q16280 664 aa17.84■□□□□ 0.45
USP28-208ENST00000540438 CELF3Q5SZQ8 465 aaKnown RBP17.84■□□□□ 0.45
USP28-208ENST00000540438 SPOCD1Q6ZMY3 1216 aa17.84■□□□□ 0.45
USP28-208ENST00000540438 TMEM35BQ8NCS4 154 aa17.84■□□□□ 0.45
USP28-208ENST00000540438 ACTL9Q8TC94 416 aa17.84■□□□□ 0.45
USP28-208ENST00000540438 NLRP7Q8WX94 980 aa17.84■□□□□ 0.45
USP28-208ENST00000540438 TRIM56Q9BRZ2 755 aaKnown RBP17.84■□□□□ 0.45
USP28-208ENST00000540438 XYLT2Q9H1B5 865 aa17.84■□□□□ 0.45
USP28-208ENST00000540438 CACNG4Q9UBN1 327 aa17.84■□□□□ 0.45
USP28-208ENST00000540438 CPSF3Q9UKF6 684 aaKnown RBP17.84■□□□□ 0.45
USP28-208ENST00000540438 AGAP1Q9UPQ3 857 aa17.84■□□□□ 0.45
USP28-208ENST00000540438 NEU2Q9Y3R4 380 aa17.84■□□□□ 0.45
USP28-208ENST00000540438 IGKV6D-21A0A0A0MT36 114 aa17.84■□□□□ 0.45
USP28-208ENST00000540438 ERBB2P04626 1255 aa17.84■□□□□ 0.45
USP28-208ENST00000540438 STAG3L1P0CL83 205 aa17.84■□□□□ 0.45
USP28-208ENST00000540438 HNRNPH1P31943 449 aaKnown RBP17.84■□□□□ 0.45
USP28-208ENST00000540438 MAP1SQ66K74 1059 aaPredicted RBP17.84■□□□□ 0.45
USP28-208ENST00000540438 VSTM1Q6UX27 236 aa17.84■□□□□ 0.45
USP28-208ENST00000540438 TEX2Q8IWB9 1127 aa17.84■□□□□ 0.45
USP28-208ENST00000540438 KIF2BQ8N4N8 673 aa17.84■□□□□ 0.45
USP28-208ENST00000540438 AVENQ9NQS1 362 aaPredicted RBP17.84■□□□□ 0.45
USP28-208ENST00000540438 TRIM33Q9UPN9 1127 aa17.84■□□□□ 0.45
USP28-208ENST00000540438 ZC3H11AO75152 810 aaKnown RBP eCLIP17.83■□□□□ 0.457e-6■■■■■ 33.7
USP28-208ENST00000540438 AVILO75366 819 aa17.83■□□□□ 0.45
USP28-208ENST00000540438 TNNC2P02585 160 aa17.83■□□□□ 0.45
USP28-208ENST00000540438 MAGEA4P43358 317 aa17.83■□□□□ 0.45
USP28-208ENST00000540438 MNAT1P51948 309 aa17.83■□□□□ 0.45
USP28-208ENST00000540438 OTUD4Q01804 1114 aaKnown RBP17.83■□□□□ 0.45
USP28-208ENST00000540438 C1orf228Q6PIY5 440 aa17.83■□□□□ 0.45
USP28-208ENST00000540438 RHBDF2Q6PJF5 856 aa17.83■□□□□ 0.45
USP28-208ENST00000540438 C7orf31Q8N865 590 aa17.83■□□□□ 0.45
USP28-208ENST00000540438 FAM71DQ8N9W8 422 aa17.83■□□□□ 0.45
USP28-208ENST00000540438 LBHD1Q9BQE6 289 aaPredicted RBP17.83■□□□□ 0.45
USP28-208ENST00000540438 MIS12Q9H081 205 aa17.83■□□□□ 0.45
USP28-208ENST00000540438 RPF1Q9H9Y2 349 aaKnown RBP17.83■□□□□ 0.45
USP28-208ENST00000540438 PARP2Q9UGN5 583 aa17.83■□□□□ 0.45
USP28-208ENST00000540438 A0A1W2PPM1 405 aa17.83■□□□□ 0.44
USP28-208ENST00000540438 H0YCG3 227 aa17.83■□□□□ 0.44
USP28-208ENST00000540438 STAM2O75886 525 aa17.83■□□□□ 0.44
USP28-208ENST00000540438 ITIH2P19823 946 aa17.83■□□□□ 0.44
USP28-208ENST00000540438 ICAM3P32942 547 aa17.83■□□□□ 0.44
USP28-208ENST00000540438 PHKA2P46019 1235 aa17.83■□□□□ 0.44
USP28-208ENST00000540438 PDIA2Q13087 525 aaKnown RBP17.83■□□□□ 0.44
USP28-208ENST00000540438 CDCA5Q96FF9 252 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms