RNA–Protein interactions for RNA: ENST00000540021.5

MSH6-210, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 3,930 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-210ENST00000540021 MEI4A8MW99 385 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 DKC1O60832 514 aaKnown RBP eCLIP13.6□□□□□ -0.23
MSH6-210ENST00000540021 EDF1O60869 148 aaKnown RBP13.6□□□□□ -0.23
MSH6-210ENST00000540021 ZNF200P98182 395 aaPredicted RBP13.6□□□□□ -0.23
MSH6-210ENST00000540021 CHI3L2Q15782 390 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 SLC27A3Q5K4L6 730 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 OR6B2Q6IFH4 312 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 ENOSF1Q7L5Y1 443 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 SPATA24Q86W54 205 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 AMIGO3Q86WK7 504 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 BTBD10Q9BSF8 475 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 TBC1D22BQ9NU19 505 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 FCHO1O14526 889 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 NDC80O14777 642 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 ATP6V1C1P21283 382 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 CUL3Q13618 768 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 PDK4Q16654 411 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 CDR2LQ86X02 465 aaPredicted RBP13.6□□□□□ -0.23
MSH6-210ENST00000540021 ZCCHC9Q8N567 271 aaKnown RBP13.6□□□□□ -0.23
MSH6-210ENST00000540021 DEPDC1BQ8WUY9 529 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 UCMAQ8WVF2 138 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 RIT2Q99578 217 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 TMEM109Q9BVC6 243 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 TARS2Q9BW92 718 aaKnown RBP13.6□□□□□ -0.23
MSH6-210ENST00000540021 ARL8BQ9NVJ2 186 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 FAM237BA0A1B0GVD1 139 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 SMNDC1O75940 238 aaKnown RBP eCLIP13.6□□□□□ -0.23
MSH6-210ENST00000540021 KRT3P12035 628 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 CDH6P55285 790 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 GPAT2Q6NUI2 795 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 DSTYKQ6XUX3 929 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 PODNQ7Z5L7 613 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 PCGF5Q86SE9 256 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 RSPH3Q86UC2 560 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 MAB21L3Q8N8X9 362 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 SPATA18Q8TC71 538 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 MIPOL1Q8TD10 442 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 TSNARE1Q96NA8 513 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 MOV10L1Q9BXT6 1211 aaKnown RBP13.6□□□□□ -0.23
MSH6-210ENST00000540021 ZNF142P52746 1687 aaPredicted RBP13.6□□□□□ -0.23
MSH6-210ENST00000540021 ECM29Q5VYK3 1845 aa13.6□□□□□ -0.23
MSH6-210ENST00000540021 CALB1P05937 261 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 NCOA4Q13772 614 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 WASHC2DQ5SRD0 308 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 WDR75Q8IWA0 830 aaKnown RBP13.59□□□□□ -0.23
MSH6-210ENST00000540021 POU5F2Q8N7G0 328 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 GLIS1Q8NBF1 620 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 TAAR1Q96RJ0 339 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 LRMDAQ9H2I8 198 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 SMYD2Q9NRG4 433 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 MTO1Q9Y2Z2 717 aaKnown RBP13.59□□□□□ -0.23
MSH6-210ENST00000540021 TTLL3Q9Y4R7 772 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 NUP98P52948 1817 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 ZMYM2Q9UBW7 1377 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 PARP4Q9UKK3 1724 aaKnown RBP13.59□□□□□ -0.23
MSH6-210ENST00000540021 INO80B-WBP1J3KQ70 363 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 PSTPIP1O43586 416 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 TPBGLP0DKB5 382 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 CIITAP33076 1130 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 SLC34A1Q06495 639 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 ASPHQ12797 758 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 TRIP10Q15642 601 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 SPOCD1Q6ZMY3 1216 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 ZCCHC23Q6ZST2 131 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 EXD1Q8NHP7 514 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 GSDMBQ8TAX9 411 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 PRMT6Q96LA8 375 aaPredicted RBP13.59□□□□□ -0.23
MSH6-210ENST00000540021 INO80BQ9C086 356 aaPredicted RBP13.59□□□□□ -0.23
MSH6-210ENST00000540021 GPR88Q9GZN0 384 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 NOCTQ9UK39 431 aaKnown RBP13.59□□□□□ -0.23
MSH6-210ENST00000540021 LRCH1Q9Y2L9 728 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.59□□□□□ -0.23
MSH6-210ENST00000540021 MMP10P09238 476 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 CYP24A1Q07973 514 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 FAM160B2Q86V87 743 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 CEP70Q8NHQ1 597 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 LRRN4Q8WUT4 740 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 SREK1Q8WXA9 508 aaKnown RBP13.59□□□□□ -0.23
MSH6-210ENST00000540021 INPP5DQ92835 1189 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 DDX27Q96GQ7 796 aaKnown RBP13.59□□□□□ -0.23
MSH6-210ENST00000540021 TXLNGYQ9BZA5 131 aa13.59□□□□□ -0.23
MSH6-210ENST00000540021 APOBEC2Q9Y235 224 aaKnown RBP13.59□□□□□ -0.23
MSH6-210ENST00000540021 ETS2P15036 469 aa13.58□□□□□ -0.23
MSH6-210ENST00000540021 AQP5P55064 265 aa13.58□□□□□ -0.23
MSH6-210ENST00000540021 HIC1Q14526 733 aa13.58□□□□□ -0.23
MSH6-210ENST00000540021 TKFCQ3LXA3 575 aa13.58□□□□□ -0.23
MSH6-210ENST00000540021 TLDC1Q6P9B6 456 aa13.58□□□□□ -0.23
MSH6-210ENST00000540021 CLNKQ7Z7G1 428 aa13.58□□□□□ -0.23
MSH6-210ENST00000540021 PPIL6Q8IXY8 311 aa13.58□□□□□ -0.23
MSH6-210ENST00000540021 NDUFAF2Q8N183 169 aa13.58□□□□□ -0.23
MSH6-210ENST00000540021 IL31RAQ8NI17 732 aa13.58□□□□□ -0.23
MSH6-210ENST00000540021 AAASQ9NRG9 546 aa13.58□□□□□ -0.23
MSH6-210ENST00000540021 PCDHA10Q9Y5I2 948 aa13.58□□□□□ -0.23
MSH6-210ENST00000540021 SPATA31A5Q5VU36 1347 aa13.58□□□□□ -0.24
MSH6-210ENST00000540021 SPATA31A7Q8IWB4 1347 aa13.58□□□□□ -0.24
MSH6-210ENST00000540021 KCNN4O15554 427 aa13.58□□□□□ -0.24
MSH6-210ENST00000540021 TNNC2P02585 160 aa13.58□□□□□ -0.24
MSH6-210ENST00000540021 BTKQ06187 659 aa13.58□□□□□ -0.24
MSH6-210ENST00000540021 CUL2Q13617 745 aa13.58□□□□□ -0.24
MSH6-210ENST00000540021 TRIM42Q8IWZ5 723 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms