RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 C4orf32Q8N8J7 132 aa12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 SPIRE2Q8WWL2 714 aa12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 EXOC4Q96A65 974 aa12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 HHIPQ96QV1 700 aa12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 TSPAN18Q96SJ8 248 aa12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 SEPT5Q99719 369 aaPredicted RBP12.62□□□□□ -0.39
CLSTN3-209ENST00000539982 LNP1A1A4G5 178 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 SRRM3A6NNA2 597 aaPredicted RBP12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 SOBPA7XYQ1 873 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 LACTBL1A8MY62 500 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 KHNYNO15037 678 aaKnown RBP12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 APBB3O95704 486 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 TOP3BO95985 862 aaKnown RBP12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 ATF6P18850 670 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 MATR3P43243 847 aaKnown RBP eCLIP12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 SMTNP53814 917 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 PPP2R3AQ06190 1150 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 MGAT5BQ3V5L5 792 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 CC2D1AQ6P1N0 951 aaPredicted RBP12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 LRSAM1Q6UWE0 723 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 TMEM161BQ8NDZ6 487 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 OR10T2Q8NGX3 314 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 RPLP0P6Q8NHW5 317 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 SNX29Q8TEQ0 813 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 GATA6Q92908 595 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 USP13Q92995 863 aaPredicted RBP12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 SENP8Q96LD8 212 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 P2RY13Q9BPV8 354 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 RUSC1Q9BVN2 902 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 TIPINQ9BVW5 301 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 SCNM1Q9BWG6 230 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 TMEM9BQ9NQ34 198 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 TDP1Q9NUW8 608 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 TBX20Q9UMR3 447 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 CCL26Q9Y258 94 aa12.61□□□□□ -0.39
CLSTN3-209ENST00000539982 FASNP49327 2511 aaKnown RBP12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 CDX4O14627 284 aaPredicted RBP12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 F11P03951 625 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 CYP11A1P05108 521 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 ADRB2P07550 413 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 MAPTP10636 758 aaKnown RBP12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 ODC1P11926 461 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 PLS3P13797 630 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 GUCY2CP25092 1073 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 DDX6P26196 483 aaKnown RBP eCLIP12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 GBP1P32455 592 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 GUCY2FP51841 1108 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 GUCY1B3Q02153 619 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 SMARCB1Q12824 385 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 BFSP1Q12934 665 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 DMC1Q14565 340 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 PDGFRLQ15198 375 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 KYAT1Q16773 422 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 SLC39A12Q504Y0 691 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 TTC38Q5R3I4 469 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 SPATA1Q5VX52 437 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 TMEM150AQ86TG1 271 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 C11orf74Q86VG3 221 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 MAB21L3Q8N8X9 362 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 IGSF22Q8N9C0 903 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 GIPC2Q8TF65 315 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 C2orf15Q8WU43 125 aaKnown RBP12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 RAB34Q9BZG1 259 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 HAPLN2Q9GZV7 340 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 ZCWPW1Q9H0M4 648 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 FOXP1Q9H334 677 aaPredicted RBP12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 KIF9Q9HAQ2 790 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 PPP4R2Q9NY27 417 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 AKAP13Q12802 2813 aa12.6□□□□□ -0.39
CLSTN3-209ENST00000539982 PPEF2O14830 753 aa12.59□□□□□ -0.39
CLSTN3-209ENST00000539982 HAPLN1P10915 354 aaPredicted RBP12.59□□□□□ -0.39
CLSTN3-209ENST00000539982 ARSAP15289 507 aa12.59□□□□□ -0.39
CLSTN3-209ENST00000539982 GJA4P35212 333 aa12.59□□□□□ -0.39
CLSTN3-209ENST00000539982 TNFSF9P41273 254 aa12.59□□□□□ -0.39
CLSTN3-209ENST00000539982 TRAPPC10P48553 1259 aa12.59□□□□□ -0.39
CLSTN3-209ENST00000539982 DGKEP52429 567 aa12.59□□□□□ -0.39
CLSTN3-209ENST00000539982 NLRP12P59046 1061 aa12.59□□□□□ -0.39
CLSTN3-209ENST00000539982 ANAPC15P60006 121 aa12.59□□□□□ -0.39
CLSTN3-209ENST00000539982 USP39Q53GS9 565 aaKnown RBP12.59□□□□□ -0.39
CLSTN3-209ENST00000539982 KRT79Q5XKE5 535 aa12.59□□□□□ -0.39
CLSTN3-209ENST00000539982 PMS2CLQ68D20 193 aa12.59□□□□□ -0.39
CLSTN3-209ENST00000539982 ACDQ96AP0 544 aa12.59□□□□□ -0.39
CLSTN3-209ENST00000539982 DSEQ9UL01 958 aa12.59□□□□□ -0.39
CLSTN3-209ENST00000539982 PKD1L2Q7Z442 2459 aa12.59□□□□□ -0.39
CLSTN3-209ENST00000539982 PIRO00625 290 aa12.58□□□□□ -0.4
CLSTN3-209ENST00000539982 HMGA1P17096 107 aaKnown RBP12.58□□□□□ -0.4
CLSTN3-209ENST00000539982 U2AF2P26368 475 aaKnown RBP eCLIP12.58□□□□□ -0.4
CLSTN3-209ENST00000539982 NMT1P30419 496 aaKnown RBP12.58□□□□□ -0.4
CLSTN3-209ENST00000539982 CDR1P51861 262 aa12.58□□□□□ -0.4
CLSTN3-209ENST00000539982 IRX4P78413 519 aa12.58□□□□□ -0.4
CLSTN3-209ENST00000539982 RING1Q06587 406 aa12.58□□□□□ -0.4
CLSTN3-209ENST00000539982 ZNF268Q14587 947 aaPredicted RBP12.58□□□□□ -0.4
CLSTN3-209ENST00000539982 ENOX2Q16206 610 aaKnown RBP12.58□□□□□ -0.4
CLSTN3-209ENST00000539982 C9orf57Q5W0N0 161 aa12.58□□□□□ -0.4
CLSTN3-209ENST00000539982 NAIF1Q69YI7 327 aaPredicted RBP12.58□□□□□ -0.4
CLSTN3-209ENST00000539982 TXNDC8Q6A555 127 aa12.58□□□□□ -0.4
CLSTN3-209ENST00000539982 KCNK18Q7Z418 384 aa12.58□□□□□ -0.4
CLSTN3-209ENST00000539982 LRRTM3Q86VH5 581 aa12.58□□□□□ -0.4
CLSTN3-209ENST00000539982 MON1AQ86VX9 555 aa12.58□□□□□ -0.4
CLSTN3-209ENST00000539982 METTL23Q86XA0 190 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms