RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 TMCO4Q5TGY1 634 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 FOXB2Q5VYV0 432 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 TBC1D9BQ66K14 1250 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 DPY19L2P1Q6NXN4 242 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 RHBDF2Q6PJF5 856 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 SHISA2Q6UWI4 295 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 EPM2AIP1Q7L775 607 aaPredicted RBP7.09□□□□□ -1.27
USP28-207ENST00000538475 NEK8Q86SG6 692 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 ZNF554Q86TJ5 538 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 FBXO11Q86XK2 927 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 FAM133AQ8N9E0 248 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 EPS8L3Q8TE67 593 aaKnown RBP7.09□□□□□ -1.27
USP28-207ENST00000538475 DENND1AQ8TEH3 1009 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 TRPC4APQ8TEL6 797 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 DIS3LQ8TF46 1054 aaKnown RBP7.09□□□□□ -1.27
USP28-207ENST00000538475 NAT14Q8WUY8 206 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 C10orf82Q8WW14 230 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 LRRC59Q96AG4 307 aaKnown RBP7.09□□□□□ -1.27
USP28-207ENST00000538475 ALKBH8Q96BT7 664 aaKnown RBP7.09□□□□□ -1.27
USP28-207ENST00000538475 NSL1Q96IY1 281 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 BTBD9Q96Q07 612 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 TRIM51Q9BSJ1 452 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 CELF4Q9BZC1 486 aaKnown RBP7.09□□□□□ -1.27
USP28-207ENST00000538475 UBA5Q9GZZ9 404 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 KIAA1683Q9H0B3 1180 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 ARMT1Q9H993 441 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 MKNK2Q9HBH9 465 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 C6orf50Q9HD87 102 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 KCNK9Q9NPC2 374 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 CNNM1Q9NRU3 951 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 BLOC1S4Q9NUP1 217 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 BARHL2Q9NY43 387 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 STK32BQ9NY57 414 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 TUBA8Q9NY65 449 aaPredicted RBP7.09□□□□□ -1.27
USP28-207ENST00000538475 EURLQ9NYK6 297 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 ZFP69BQ9UJL9 534 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 ZMYND8Q9ULU4 1186 aaPredicted RBP7.09□□□□□ -1.27
USP28-207ENST00000538475 PHTF1Q9UMS5 762 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 PACSIN2Q9UNF0 486 aaPredicted RBP7.09□□□□□ -1.27
USP28-207ENST00000538475 TRAF3IP3Q9Y228 551 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 MTO1Q9Y2Z2 717 aaKnown RBP7.09□□□□□ -1.27
USP28-207ENST00000538475 SNX24Q9Y343 169 aa7.09□□□□□ -1.27
USP28-207ENST00000538475 ZNFX1Q9P2E3 1918 aaKnown RBP7.09□□□□□ -1.27
USP28-207ENST00000538475 CDK5RAP2Q96SN8 1893 aa7.09□□□□□ -1.28
USP28-207ENST00000538475 ARHGAP10A1A4S6 786 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 MYMKA6NI61 221 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 PDXKO00764 312 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 CAPN9O14815 690 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 GSC2O15499 205 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 PEX1O43933 1283 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 ECEL1O95672 775 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 SELPP16109 830 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 GM2AP17900 193 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 GALCP54803 685 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 ASPHQ12797 758 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 GRB10Q13322 594 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 PTK6Q13882 451 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 RASGRF1Q13972 1273 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 RASA3Q14644 834 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 RCN1Q15293 331 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 EXOC3L4Q17RC7 722 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 CCDC92Q53HC0 331 aaPredicted RBP7.08□□□□□ -1.28
USP28-207ENST00000538475 XP32Q5T750 250 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 KRT79Q5XKE5 535 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 CGB2Q6NT52 195 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 CCDC137Q6PK04 289 aaKnown RBP7.08□□□□□ -1.28
USP28-207ENST00000538475 KYAT3Q6YP21 454 aaKnown RBP7.08□□□□□ -1.28
USP28-207ENST00000538475 B3GNT6Q6ZMB0 384 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 C3orf62Q6ZUJ4 267 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 CENPUQ71F23 418 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 CCDC80Q76M96 950 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 MIGA2Q7L4E1 593 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 TMC4Q7Z404 712 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 ZC3H18Q86VM9 953 aaKnown RBP7.08□□□□□ -1.28
USP28-207ENST00000538475 MYLK4Q86YV6 388 aaPredicted RBP7.08□□□□□ -1.28
USP28-207ENST00000538475 TMEM126BQ8IUX1 230 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 CACTIN-AS1Q8N1I8 211 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 LCORLQ8N3X6 602 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 DDX51Q8N8A6 666 aaKnown RBP eCLIP7.08□□□□□ -1.28
USP28-207ENST00000538475 DDI1Q8WTU0 396 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 SCFD1Q8WVM8 642 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 WDR60Q8WVS4 1066 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 HAUS1Q96CS2 278 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 CEP95Q96GE4 821 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 SNF8Q96H20 258 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 AGAP3Q96P47 875 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 TUBGCP5Q96RT8 1024 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 SLX1AQ9BQ83 275 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 ZKSCAN3Q9BRR0 538 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 POLR3CQ9BUI4 534 aaPredicted RBP7.08□□□□□ -1.28
USP28-207ENST00000538475 TRAIPQ9BWF2 469 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 PACSIN1Q9BY11 444 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 MTFR1LQ9H019 292 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 CCDC113Q9H0I3 377 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 CDC42EP4Q9H3Q1 356 aaKnown RBP7.08□□□□□ -1.28
USP28-207ENST00000538475 KANSL3Q9P2N6 904 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 ANKFY1Q9P2R3 1169 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 SLC24A2Q9UI40 661 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 HAO1Q9UJM8 370 aa7.08□□□□□ -1.28
USP28-207ENST00000538475 DBR1Q9UK59 544 aaKnown RBP7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 303.7 ms