RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 GAREM2Q75VX8 874 aa17.43■□□□□ 0.38
CLSTN3-204ENST00000535313 LRRTM3Q86VH5 581 aa17.43■□□□□ 0.38
CLSTN3-204ENST00000535313 ADSSL1Q8N142 457 aa17.43■□□□□ 0.38
CLSTN3-204ENST00000535313 LRRC52Q8N7C0 313 aa17.43■□□□□ 0.38
CLSTN3-204ENST00000535313 CLDN23Q96B33 292 aa17.43■□□□□ 0.38
CLSTN3-204ENST00000535313 GCNAQ96QF7 691 aa17.43■□□□□ 0.38
CLSTN3-204ENST00000535313 LPIN3Q9BQK8 851 aa17.43■□□□□ 0.38
CLSTN3-204ENST00000535313 PDE11AQ9HCR9 933 aa17.43■□□□□ 0.38
CLSTN3-204ENST00000535313 ABI2Q9NYB9 513 aaPredicted RBP17.43■□□□□ 0.38
CLSTN3-204ENST00000535313 ZNF233A6NK53 670 aa17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 DPYSL4O14531 572 aa17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 LMNAP02545 664 aaKnown RBP17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 ZSCAN22P10073 491 aaPredicted RBP17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 HAPLN1P10915 354 aaPredicted RBP17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 CDC25CP30307 473 aa17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 RPS9P46781 194 aaKnown RBP17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 BFSP1Q12934 665 aa17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 NFE2Q16621 373 aaPredicted RBP17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 STXBP5Q5T5C0 1151 aa17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 GPR158Q5T848 1215 aa17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 SHC4Q6S5L8 630 aa17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 ARID3BQ8IVW6 561 aaPredicted RBP17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 PDCL2Q8N4E4 241 aa17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 CSGALNACT1Q8TDX6 532 aa17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 HPS3Q969F9 1004 aa17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 ANKRD36BP1Q96IX9 119 aa17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 MTMR12Q9C0I1 747 aa17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 MAGEF1Q9HAY2 307 aa17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 FBXO4Q9UKT5 387 aa17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 PCDHB5Q9Y5E4 795 aa17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 PIAS3Q9Y6X2 628 aa17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 TCHHQ07283 1943 aa17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 GVINP1Q7Z2Y8 2422 aa17.42■□□□□ 0.38
CLSTN3-204ENST00000535313 EIF3DO15371 548 aaKnown RBP eCLIP17.41■□□□□ 0.38
CLSTN3-204ENST00000535313 F13A1P00488 732 aa17.41■□□□□ 0.38
CLSTN3-204ENST00000535313 ATF6P18850 670 aa17.41■□□□□ 0.38
CLSTN3-204ENST00000535313 ME1P48163 572 aa17.41■□□□□ 0.38
CLSTN3-204ENST00000535313 MYL7Q01449 175 aa17.41■□□□□ 0.38
CLSTN3-204ENST00000535313 SURF1Q15526 300 aa17.41■□□□□ 0.38
CLSTN3-204ENST00000535313 CNNM4Q6P4Q7 775 aa17.41■□□□□ 0.38
CLSTN3-204ENST00000535313 MAML2Q8IZL2 1156 aaPredicted RBP17.41■□□□□ 0.38
CLSTN3-204ENST00000535313 TMEM86AQ8N2M4 240 aa17.41■□□□□ 0.38
CLSTN3-204ENST00000535313 GLIS3Q8NEA6 775 aa17.41■□□□□ 0.38
CLSTN3-204ENST00000535313 GIPC2Q8TF65 315 aa17.41■□□□□ 0.38
CLSTN3-204ENST00000535313 FAM3CQ92520 227 aa17.41■□□□□ 0.38
CLSTN3-204ENST00000535313 C7orf25Q9BPX7 421 aa17.41■□□□□ 0.38
CLSTN3-204ENST00000535313 ACBD6Q9BR61 282 aa17.41■□□□□ 0.38
CLSTN3-204ENST00000535313 TASP1Q9H6P5 420 aa17.41■□□□□ 0.38
CLSTN3-204ENST00000535313 KIAA1586Q9HCI6 787 aa17.41■□□□□ 0.38
CLSTN3-204ENST00000535313 DDX43Q9NXZ2 648 aaKnown RBP17.41■□□□□ 0.38
CLSTN3-204ENST00000535313 FAM13BQ9NYF5 915 aa17.41■□□□□ 0.38
CLSTN3-204ENST00000535313 NDRG2Q9UN36 371 aaKnown RBP17.41■□□□□ 0.38
CLSTN3-204ENST00000535313 L1RE1Q9UN81 338 aa17.41■□□□□ 0.38
CLSTN3-204ENST00000535313 SNX9Q9Y5X1 595 aa17.41■□□□□ 0.38
CLSTN3-204ENST00000535313 EP300Q09472 2414 aaPredicted RBP17.41■□□□□ 0.38
CLSTN3-204ENST00000535313 CHADO15335 359 aa17.4■□□□□ 0.38
CLSTN3-204ENST00000535313 POLR2DO15514 142 aaKnown RBP17.4■□□□□ 0.38
CLSTN3-204ENST00000535313 TNNC2P02585 160 aa17.4■□□□□ 0.38
CLSTN3-204ENST00000535313 CSTF1Q05048 431 aaKnown RBP17.4■□□□□ 0.38
CLSTN3-204ENST00000535313 FCHO2Q0JRZ9 810 aa17.4■□□□□ 0.38
CLSTN3-204ENST00000535313 MYO1EQ12965 1108 aa17.4■□□□□ 0.38
CLSTN3-204ENST00000535313 ZNF528Q3MIS6 628 aa17.4■□□□□ 0.38
CLSTN3-204ENST00000535313 FAM26FQ5R3K3 315 aa17.4■□□□□ 0.38
CLSTN3-204ENST00000535313 ATL3Q6DD88 541 aa17.4■□□□□ 0.38
CLSTN3-204ENST00000535313 GPIHBP1Q8IV16 184 aa17.4■□□□□ 0.38
CLSTN3-204ENST00000535313 TOP6BLQ8N6T0 577 aa17.4■□□□□ 0.38
CLSTN3-204ENST00000535313 SPATA18Q8TC71 538 aa17.4■□□□□ 0.38
CLSTN3-204ENST00000535313 RSPRY1Q96DX4 576 aa17.4■□□□□ 0.38
CLSTN3-204ENST00000535313 MKNK1Q9BUB5 465 aa17.4■□□□□ 0.38
CLSTN3-204ENST00000535313 INTS13Q9NVM9 706 aa17.4■□□□□ 0.38
CLSTN3-204ENST00000535313 GDAP2Q9NXN4 497 aa17.4■□□□□ 0.38
CLSTN3-204ENST00000535313 OBP2AQ9NY56 170 aa17.4■□□□□ 0.38
CLSTN3-204ENST00000535313 HSPBP1Q9NZL4 362 aa17.4■□□□□ 0.38
CLSTN3-204ENST00000535313 SIX4Q9UIU6 781 aa17.4■□□□□ 0.38
CLSTN3-204ENST00000535313 CFAP45Q9UL16 551 aa17.4■□□□□ 0.38
CLSTN3-204ENST00000535313 NCANO14594 1321 aa17.4■□□□□ 0.38
CLSTN3-204ENST00000535313 SHISA7A6NL88 538 aa17.39■□□□□ 0.37
CLSTN3-204ENST00000535313 PRPF40AO75400 957 aaKnown RBP17.39■□□□□ 0.37
CLSTN3-204ENST00000535313 WEE1P30291 646 aa17.39■□□□□ 0.37
CLSTN3-204ENST00000535313 LHX1P48742 406 aa17.39■□□□□ 0.37
CLSTN3-204ENST00000535313 MLLT6P55198 1093 aaPredicted RBP17.39■□□□□ 0.37
CLSTN3-204ENST00000535313 CYP4F8P98187 520 aa17.39■□□□□ 0.37
CLSTN3-204ENST00000535313 DUOXA2Q1HG44 320 aa17.39■□□□□ 0.37
CLSTN3-204ENST00000535313 LMBRD2Q68DH5 695 aaPredicted RBP17.39■□□□□ 0.37
CLSTN3-204ENST00000535313 C1orf228Q6PIY5 440 aa17.39■□□□□ 0.37
CLSTN3-204ENST00000535313 UNC13DQ70J99 1090 aa17.39■□□□□ 0.37
CLSTN3-204ENST00000535313 CBWD2Q8IUF1 395 aa17.39■□□□□ 0.37
CLSTN3-204ENST00000535313 CXorf38Q8TB03 319 aa17.39■□□□□ 0.37
CLSTN3-204ENST00000535313 ZNF507Q8TCN5 953 aa17.39■□□□□ 0.37
CLSTN3-204ENST00000535313 LEO1Q8WVC0 666 aaPredicted RBP17.39■□□□□ 0.37
CLSTN3-204ENST00000535313 MSANTD3Q96H12 275 aa17.39■□□□□ 0.37
CLSTN3-204ENST00000535313 FAM84AQ96KN4 292 aa17.39■□□□□ 0.37
CLSTN3-204ENST00000535313 PI4K2AQ9BTU6 479 aa17.39■□□□□ 0.37
CLSTN3-204ENST00000535313 IL21Q9HBE4 155 aa17.39■□□□□ 0.37
CLSTN3-204ENST00000535313 TMLHEQ9NVH6 421 aa17.39■□□□□ 0.37
CLSTN3-204ENST00000535313 ZMYM5Q9UJ78 669 aa17.39■□□□□ 0.37
CLSTN3-204ENST00000535313 SPTBN4Q9H254 2564 aa17.39■□□□□ 0.37
CLSTN3-204ENST00000535313 ARNTLO00327 626 aa17.38■□□□□ 0.37
CLSTN3-204ENST00000535313 KINO60870 393 aaKnown RBP17.38■□□□□ 0.37
CLSTN3-204ENST00000535313 ACAT1P24752 427 aaKnown RBP17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms