RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 KIAA1257Q9ULG3 409 aa22.56■■□□□ 1.2
VPS28-212ENST00000530836 TRIP11Q15643 1979 aa22.55■■□□□ 1.2
VPS28-212ENST00000530836 FAM163BP0C2L3 166 aa22.55■■□□□ 1.2
VPS28-212ENST00000530836 UNGP13051 313 aaPredicted RBP22.55■■□□□ 1.2
VPS28-212ENST00000530836 MYOGP15173 224 aa22.55■■□□□ 1.2
VPS28-212ENST00000530836 MLH1P40692 756 aa22.55■■□□□ 1.2
VPS28-212ENST00000530836 AGMOQ6ZNB7 445 aa22.55■■□□□ 1.2
VPS28-212ENST00000530836 UBE2Q2Q8WVN8 375 aa22.55■■□□□ 1.2
VPS28-212ENST00000530836 YME1L1Q96TA2 773 aa22.55■■□□□ 1.2
VPS28-212ENST00000530836 ZNF518BQ9C0D4 1074 aa22.55■■□□□ 1.2
VPS28-212ENST00000530836 RC3H2Q9HBD1 1191 aaKnown RBP22.55■■□□□ 1.2
VPS28-212ENST00000530836 PUF60Q9UHX1 559 aaKnown RBP22.55■■□□□ 1.2
VPS28-212ENST00000530836 SALL4Q9UJQ4 1053 aa22.55■■□□□ 1.2
VPS28-212ENST00000530836 PCDHGC3Q9UN70 934 aa22.55■■□□□ 1.2
VPS28-212ENST00000530836 CAPN6Q9Y6Q1 641 aa22.55■■□□□ 1.2
VPS28-212ENST00000530836 ARL5CA6NH57 179 aa22.54■■□□□ 1.2
VPS28-212ENST00000530836 HOXA2O43364 376 aa22.54■■□□□ 1.2
VPS28-212ENST00000530836 MYBL1P10243 752 aa22.54■■□□□ 1.2
VPS28-212ENST00000530836 PAX3P23760 479 aa22.54■■□□□ 1.2
VPS28-212ENST00000530836 RPL9P32969 192 aaKnown RBP22.54■■□□□ 1.2
VPS28-212ENST00000530836 NOP2P46087 812 aaKnown RBP22.54■■□□□ 1.2
VPS28-212ENST00000530836 CENPCQ03188 943 aa22.54■■□□□ 1.2
VPS28-212ENST00000530836 LPPQ93052 612 aa22.54■■□□□ 1.2
VPS28-212ENST00000530836 TMEM176AQ96HP8 235 aa22.54■■□□□ 1.2
VPS28-212ENST00000530836 VCPIP1Q96JH7 1222 aa22.54■■□□□ 1.2
VPS28-212ENST00000530836 ZFP42Q96MM3 310 aa22.54■■□□□ 1.2
VPS28-212ENST00000530836 GAD1Q99259 594 aa22.54■■□□□ 1.2
VPS28-212ENST00000530836 SDCBP2Q9H190 292 aa22.54■■□□□ 1.2
VPS28-212ENST00000530836 RNF19AQ9NV58 838 aa22.54■■□□□ 1.2
VPS28-212ENST00000530836 YBX2Q9Y2T7 364 aaKnown RBP22.54■■□□□ 1.2
VPS28-212ENST00000530836 CEP83Q9Y592 693 aa22.54■■□□□ 1.2
VPS28-212ENST00000530836 SNX9Q9Y5X1 595 aa22.54■■□□□ 1.2
VPS28-212ENST00000530836 KPNA7A9QM74 516 aa22.53■■□□□ 1.2
VPS28-212ENST00000530836 SOX1O00570 391 aaPredicted RBP22.53■■□□□ 1.2
VPS28-212ENST00000530836 BUB1O43683 1085 aa22.53■■□□□ 1.2
VPS28-212ENST00000530836 FGFR1P11362 822 aa22.53■■□□□ 1.2
VPS28-212ENST00000530836 ABCB4P21439 1286 aa22.53■■□□□ 1.2
VPS28-212ENST00000530836 NSFP46459 744 aaKnown RBP22.53■■□□□ 1.2
VPS28-212ENST00000530836 RAD23BP54727 409 aa22.53■■□□□ 1.2
VPS28-212ENST00000530836 HADHBP55084 474 aaKnown RBP22.53■■□□□ 1.2
VPS28-212ENST00000530836 DPH6Q7L8W6 267 aa22.53■■□□□ 1.2
VPS28-212ENST00000530836 UNC93AQ86WB7 457 aa22.53■■□□□ 1.2
VPS28-212ENST00000530836 SYCE1Q8N0S2 351 aa22.53■■□□□ 1.2
VPS28-212ENST00000530836 GSTCDQ8NEC7 633 aa22.53■■□□□ 1.2
VPS28-212ENST00000530836 THAP2Q9H0W7 228 aa22.53■■□□□ 1.2
VPS28-212ENST00000530836 GTF3C4Q9UKN8 822 aa22.53■■□□□ 1.2
VPS28-212ENST00000530836 MEIS3P2A8K0S8 358 aa22.53■■□□□ 1.2
VPS28-212ENST00000530836 INPPL1O15357 1258 aa22.53■■□□□ 1.2
VPS28-212ENST00000530836 DNAJB2P25686 324 aa22.53■■□□□ 1.2
VPS28-212ENST00000530836 RAP1GAPP47736 663 aa22.53■■□□□ 1.2
VPS28-212ENST00000530836 CDH8P55286 799 aa22.53■■□□□ 1.2
VPS28-212ENST00000530836 ZNF394Q53GI3 561 aa22.53■■□□□ 1.2
VPS28-212ENST00000530836 PAPD7Q5XG87 772 aaKnown RBP22.53■■□□□ 1.2
VPS28-212ENST00000530836 SP7Q8TDD2 431 aaPredicted RBP22.53■■□□□ 1.2
VPS28-212ENST00000530836 NT5C1AQ9BXI3 368 aa22.53■■□□□ 1.2
VPS28-212ENST00000530836 VDRP11473 427 aa22.52■■□□□ 1.2
VPS28-212ENST00000530836 GATMP50440 423 aa22.52■■□□□ 1.2
VPS28-212ENST00000530836 SOX4Q06945 474 aaPredicted RBP22.52■■□□□ 1.2
VPS28-212ENST00000530836 STILQ15468 1287 aa22.52■■□□□ 1.2
VPS28-212ENST00000530836 CLLU1OSQ5K130 101 aa22.52■■□□□ 1.2
VPS28-212ENST00000530836 TMEM35BQ8NCS4 154 aa22.52■■□□□ 1.2
VPS28-212ENST00000530836 SLC35G2Q8TBE7 412 aa22.52■■□□□ 1.2
VPS28-212ENST00000530836 WHAMMQ8TF30 809 aa22.52■■□□□ 1.2
VPS28-212ENST00000530836 DDX27Q96GQ7 796 aaKnown RBP22.52■■□□□ 1.2
VPS28-212ENST00000530836 CASD1Q96PB1 797 aa22.52■■□□□ 1.2
VPS28-212ENST00000530836 LCHNA4D1U4 455 aa22.51■■□□□ 1.19
VPS28-212ENST00000530836 RIOK3O14730 519 aaKnown RBP22.51■■□□□ 1.19
VPS28-212ENST00000530836 PPEF2O14830 753 aa22.51■■□□□ 1.19
VPS28-212ENST00000530836 PALMO75781 387 aa22.51■■□□□ 1.19
VPS28-212ENST00000530836 CYP1A2P05177 515 aa22.51■■□□□ 1.19
VPS28-212ENST00000530836 CA3P07451 260 aa22.51■■□□□ 1.19
VPS28-212ENST00000530836 PRLRP16471 622 aa22.51■■□□□ 1.19
VPS28-212ENST00000530836 NOMO3P69849 1222 aa22.51■■□□□ 1.19
VPS28-212ENST00000530836 GRIK3Q13003 919 aa22.51■■□□□ 1.19
VPS28-212ENST00000530836 CMTR2Q8IYT2 770 aaKnown RBP22.51■■□□□ 1.19
VPS28-212ENST00000530836 ABI1Q8IZP0 508 aa22.51■■□□□ 1.19
VPS28-212ENST00000530836 TMEM130Q8N3G9 435 aa22.51■■□□□ 1.19
VPS28-212ENST00000530836 SLC4A11Q8NBS3 891 aa22.51■■□□□ 1.19
VPS28-212ENST00000530836 TPCN2Q8NHX9 752 aa22.51■■□□□ 1.19
VPS28-212ENST00000530836 RSPH1Q8WYR4 309 aa22.51■■□□□ 1.19
VPS28-212ENST00000530836 TIFAQ96CG3 184 aa22.51■■□□□ 1.19
VPS28-212ENST00000530836 CYFIP2Q96F07 1278 aa22.51■■□□□ 1.19
VPS28-212ENST00000530836 UROC1Q96N76 676 aa22.51■■□□□ 1.19
VPS28-212ENST00000530836 LHX5Q9H2C1 402 aa22.51■■□□□ 1.19
VPS28-212ENST00000530836 UVRAGQ9P2Y5 699 aa22.51■■□□□ 1.19
VPS28-212ENST00000530836 MRFAP1Q9Y605 127 aa22.51■■□□□ 1.19
VPS28-212ENST00000530836 TBKBP1A7MCY6 615 aa22.5■■□□□ 1.19
VPS28-212ENST00000530836 MTA2O94776 668 aa22.5■■□□□ 1.19
VPS28-212ENST00000530836 CD19P15391 556 aa22.5■■□□□ 1.19
VPS28-212ENST00000530836 CDH5P33151 784 aaPredicted RBP22.5■■□□□ 1.19
VPS28-212ENST00000530836 NDST1P52848 882 aa22.5■■□□□ 1.19
VPS28-212ENST00000530836 LILRA4P59901 499 aa22.5■■□□□ 1.19
VPS28-212ENST00000530836 BTG3Q14201 252 aaPredicted RBP22.5■■□□□ 1.19
VPS28-212ENST00000530836 GLB1LQ6UWU2 654 aa22.5■■□□□ 1.19
VPS28-212ENST00000530836 LIMS2Q7Z4I7 341 aa22.5■■□□□ 1.19
VPS28-212ENST00000530836 PHF13Q86YI8 300 aaPredicted RBP22.5■■□□□ 1.19
VPS28-212ENST00000530836 MCOLN2Q8IZK6 566 aa22.5■■□□□ 1.19
VPS28-212ENST00000530836 TOP6BLQ8N6T0 577 aa22.5■■□□□ 1.19
VPS28-212ENST00000530836 APPL2Q8NEU8 664 aa22.5■■□□□ 1.19
VPS28-212ENST00000530836 MYRIPQ8NFW9 859 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms