RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 PPP2R5EQ16537 467 aa21.95■■□□□ 1.1
VPS28-209ENST00000528142 PTPN20Q4JDL3 420 aa21.95■■□□□ 1.1
VPS28-209ENST00000528142 ZDHHC14Q8IZN3 488 aa21.95■■□□□ 1.1
VPS28-209ENST00000528142 RNF19AQ9NV58 838 aa21.95■■□□□ 1.1
VPS28-209ENST00000528142 KLK14Q9P0G3 267 aa21.95■■□□□ 1.1
VPS28-209ENST00000528142 PARP2Q9UGN5 583 aa21.95■■□□□ 1.1
VPS28-209ENST00000528142 M0QZ92 97 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 O00370 1275 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 FKTNO75072 461 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 MICAL2O94851 1124 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 ADAT2Q7Z6V5 191 aaKnown RBP21.94■■□□□ 1.1
VPS28-209ENST00000528142 RSPH3Q86UC2 560 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 ARRDC4Q8NCT1 418 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 CASKIN2Q8WXE0 1202 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 DDX27Q96GQ7 796 aaKnown RBP21.94■■□□□ 1.1
VPS28-209ENST00000528142 HEXIM2Q96MH2 286 aaKnown RBP21.94■■□□□ 1.1
VPS28-209ENST00000528142 SENP6Q9GZR1 1112 aaPredicted RBP21.94■■□□□ 1.1
VPS28-209ENST00000528142 AMACRQ9UHK6 382 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 KIAA1257Q9ULG3 409 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 GRIN2DO15399 1336 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 GOLGA6L10A0A0M3HER8 536 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 ESYT3A0FGR9 886 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 PIRO00625 290 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 CD4P01730 458 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 CHRNA1P02708 482 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 HMGCRP04035 888 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 CARSP49589 748 aaKnown RBP21.94■■□□□ 1.1
VPS28-209ENST00000528142 MAP3K21Q5TCX8 1036 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 DNAJC24Q6P3W2 148 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 SLC13A5Q86YT5 568 aaPredicted RBP21.94■■□□□ 1.1
VPS28-209ENST00000528142 C3orf20Q8ND61 904 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 CCDC26Q8TAB7 109 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.94■■□□□ 1.1
VPS28-209ENST00000528142 NT5C1AQ9BXI3 368 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 IP6K2Q9UHH9 426 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 STRIP2Q9ULQ0 834 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 SNX9Q9Y5X1 595 aa21.94■■□□□ 1.1
VPS28-209ENST00000528142 MGAT3Q09327 533 aa21.93■■□□□ 1.1
VPS28-209ENST00000528142 TRADDQ15628 312 aa21.93■■□□□ 1.1
VPS28-209ENST00000528142 FAM47CQ5HY64 1035 aa21.93■■□□□ 1.1
VPS28-209ENST00000528142 MAATS1Q7Z4T9 603 aa21.93■■□□□ 1.1
VPS28-209ENST00000528142 PRELID2Q8N945 189 aa21.93■■□□□ 1.1
VPS28-209ENST00000528142 MRPL45Q9BRJ2 306 aaKnown RBP21.93■■□□□ 1.1
VPS28-209ENST00000528142 VIPAS39Q9H9C1 493 aa21.93■■□□□ 1.1
VPS28-209ENST00000528142 GPD2P43304 727 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 EPHB4P54760 987 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 GSCP56915 257 aaPredicted RBP21.92■■□□□ 1.1
VPS28-209ENST00000528142 TAS2R40P59535 323 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 TAP1Q03518 808 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 ZNF252P-AS1Q0IIN9 211 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 SIX1Q15475 284 aaPredicted RBP21.92■■□□□ 1.1
VPS28-209ENST00000528142 SGO2Q562F6 1265 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 CYP4A22Q5TCH4 519 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 DAB2IPQ5VWQ8 1189 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 TWF2Q6IBS0 349 aaKnown RBP21.92■■□□□ 1.1
VPS28-209ENST00000528142 EIF1ADQ8N9N8 165 aaKnown RBP21.92■■□□□ 1.1
VPS28-209ENST00000528142 CPXM1Q96SM3 734 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 TJP2Q9UDY2 1190 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 LCMT1Q9UIC8 334 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 ST3GAL5Q9UNP4 418 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 TCRBV7S2A1N4TA0A589 114 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 FSCN2O14926 492 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 PSTPIP1O43586 416 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 RPS6KA5O75582 802 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 RPLP2P05387 115 aaKnown RBP21.92■■□□□ 1.1
VPS28-209ENST00000528142 CYP3A5P20815 502 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 OGDHQ02218 1023 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 EMBQ6PCB8 327 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 LCLAT1Q6UWP7 414 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 RHOT1Q8IXI2 618 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 CAVIN3Q969G5 261 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 GDAP1L1Q96MZ0 367 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 MCEEQ96PE7 176 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 SBDSQ9Y3A5 250 aaKnown RBP eCLIP21.92■■□□□ 1.1
VPS28-209ENST00000528142 NME7Q9Y5B8 376 aa21.92■■□□□ 1.1
VPS28-209ENST00000528142 TTI1O43156 1089 aa21.91■■□□□ 1.1
VPS28-209ENST00000528142 XPOTO43592 962 aaKnown RBP21.91■■□□□ 1.1
VPS28-209ENST00000528142 ATF7P17544 494 aaPredicted RBP21.91■■□□□ 1.1
VPS28-209ENST00000528142 TNNT3P45378 269 aaPredicted RBP21.91■■□□□ 1.1
VPS28-209ENST00000528142 SOX4Q06945 474 aaPredicted RBP21.91■■□□□ 1.1
VPS28-209ENST00000528142 PAK2Q13177 524 aa21.91■■□□□ 1.1
VPS28-209ENST00000528142 CYP1B1Q16678 543 aa21.91■■□□□ 1.1
VPS28-209ENST00000528142 SOWAHAQ2M3V2 549 aa21.91■■□□□ 1.1
VPS28-209ENST00000528142 SEC14L1Q92503 715 aa21.91■■□□□ 1.1
VPS28-209ENST00000528142 C18orf8Q96DM3 657 aa21.91■■□□□ 1.1
VPS28-209ENST00000528142 PLVAPQ9BX97 442 aa21.91■■□□□ 1.1
VPS28-209ENST00000528142 CHST12Q9NRB3 414 aa21.91■■□□□ 1.1
VPS28-209ENST00000528142 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.91■■□□□ 1.1
VPS28-209ENST00000528142 NFU1Q9UMS0 254 aa21.91■■□□□ 1.1
VPS28-209ENST00000528142 SIGLEC16A6NMB1 481 aa21.9■■□□□ 1.1
VPS28-209ENST00000528142 M0QYV0 167 aa21.9■■□□□ 1.1
VPS28-209ENST00000528142 PHF2O75151 1096 aa21.9■■□□□ 1.1
VPS28-209ENST00000528142 ERBB2P04626 1255 aa21.9■■□□□ 1.1
VPS28-209ENST00000528142 CTSHP09668 335 aa21.9■■□□□ 1.1
VPS28-209ENST00000528142 HOXD10P28358 340 aa21.9■■□□□ 1.1
VPS28-209ENST00000528142 GABRB2P47870 512 aa21.9■■□□□ 1.1
VPS28-209ENST00000528142 SMC1AQ14683 1233 aaKnown RBP21.9■■□□□ 1.1
VPS28-209ENST00000528142 FBXO47Q5MNV8 452 aa21.9■■□□□ 1.1
VPS28-209ENST00000528142 SND1Q7KZF4 910 aaKnown RBP eCLIP21.9■■□□□ 1.1
VPS28-209ENST00000528142 PCSK9Q8NBP7 692 aaKnown RBP21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms