RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 ASB1Q9Y576 335 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 LRRC37A2A6NM11 1700 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 CHD9Q3L8U1 2897 aa6.19□□□□□ -1.42
NUP54-218ENST00000515460 ATRNL1Q5VV63 1379 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 CLRN2A0PK11 232 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 PPFIA2O75334 1257 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 HMGCRP04035 888 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 CT47B1P0C2W7 299 aaPredicted RBP6.18□□□□□ -1.42
NUP54-218ENST00000515460 SDHAP31040 664 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 IGFALSP35858 605 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 FKBP1AP62942 108 aaKnown RBP6.18□□□□□ -1.42
NUP54-218ENST00000515460 UBXN2AP68543 259 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 IRF9Q00978 393 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 PPP2R5AQ15172 486 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 STILQ15468 1287 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 ARHGAP44Q17R89 818 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 CFAP100Q494V2 611 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 TTC31Q49AM3 519 aaPredicted RBP6.18□□□□□ -1.42
NUP54-218ENST00000515460 BEND3Q5T5X7 828 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 AP1ARQ63HQ0 302 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 LMBR1LQ6UX01 489 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 FGD2Q7Z6J4 655 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 FMNL3Q8IVF7 1028 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 GBP4Q96PP9 640 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 LBHD1Q9BQE6 289 aaPredicted RBP6.18□□□□□ -1.42
NUP54-218ENST00000515460 BOCQ9BWV1 1114 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 ZDHHC5Q9C0B5 715 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 KIAA1683Q9H0B3 1180 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 ZSWIM4Q9H7M6 989 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 UCKL1Q9NWZ5 548 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 CHCHD3Q9NX63 227 aaKnown RBP6.18□□□□□ -1.42
NUP54-218ENST00000515460 B3GALT1Q9Y5Z6 326 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 SCN9AQ15858 1988 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 ZNF462Q96JM2 2506 aa6.18□□□□□ -1.42
NUP54-218ENST00000515460 PLIN1O60240 522 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 ZBTB48P10074 688 aaPredicted RBP6.17□□□□□ -1.42
NUP54-218ENST00000515460 CYP2C19P33261 490 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 FLT3P36888 993 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 USP8P40818 1118 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 CCT2P78371 535 aaKnown RBP6.17□□□□□ -1.42
NUP54-218ENST00000515460 DGCR2P98153 550 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 EXOSC9Q06265 439 aaKnown RBP6.17□□□□□ -1.42
NUP54-218ENST00000515460 ADCY2Q08462 1091 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 FHL2Q14192 279 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 TMEM132BQ14DG7 1078 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 SUPT20HL1Q3ZLR7 823 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 CRB2Q5IJ48 1285 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 GORABQ5T7V8 394 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 IGFL4Q6B9Z1 124 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 KLHL10Q6JEL2 608 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 Q6ZSN1 163 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 TDRD7Q8NHU6 1098 aaKnown RBP6.17□□□□□ -1.42
NUP54-218ENST00000515460 ASB15Q8WXK1 588 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 DLG3Q92796 817 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 EDAQ92838 391 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 TNPO1Q92973 898 aaKnown RBP6.17□□□□□ -1.42
NUP54-218ENST00000515460 E2F7Q96AV8 911 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 ZNF503Q96F45 646 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 PUS3Q9BZE2 481 aaKnown RBP6.17□□□□□ -1.42
NUP54-218ENST00000515460 OR10A5Q9H207 317 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 C11orf49Q9H6J7 331 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 CHMP5Q9NZZ3 219 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 PPP2R3BQ9Y5P8 575 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 PFASO15067 1338 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 PLXNA3P51805 1871 aa6.17□□□□□ -1.42
NUP54-218ENST00000515460 CHD7Q9P2D1 2997 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 SPEGQ15772 3267 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 A0A0G2JNJ9 132 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 TPD52L2O43399 206 aaKnown RBP6.16□□□□□ -1.42
NUP54-218ENST00000515460 MPIG6BO95866 241 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 ASLP04424 464 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 MEOX1P50221 254 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 RWDD2BP57060 319 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 ICA1Q05084 483 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 IFIT5Q13325 482 aaKnown RBP6.16□□□□□ -1.42
NUP54-218ENST00000515460 KIF22Q14807 665 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 SEC23AQ15436 765 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 TBR1Q16650 682 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 LRRC26Q2I0M4 334 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 AAK1Q2M2I8 961 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 MIIPQ5JXC2 388 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 GJC2Q5T442 439 aaPredicted RBP6.16□□□□□ -1.42
NUP54-218ENST00000515460 OTUD7BQ6GQQ9 843 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 ZCCHC8Q6NZY4 707 aaKnown RBP6.16□□□□□ -1.42
NUP54-218ENST00000515460 LDHAL6AQ6ZMR3 332 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 LARP4Q71RC2 724 aaKnown RBP eCLIP6.16□□□□□ -1.42
NUP54-218ENST00000515460 ZNF804AQ7Z570 1209 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 EFCAB13Q8IY85 973 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 ACRBPQ8NEB7 543 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 STAG1Q8WVM7 1258 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 SYAP1Q96A49 352 aaPredicted RBP6.16□□□□□ -1.42
NUP54-218ENST00000515460 KAZALD1Q96I82 304 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 FAM84BQ96KN1 310 aaPredicted RBP6.16□□□□□ -1.42
NUP54-218ENST00000515460 HNRNPABQ99729 332 aaKnown RBP6.16□□□□□ -1.42
NUP54-218ENST00000515460 MMTAG2Q9BU76 263 aaKnown RBP6.16□□□□□ -1.42
NUP54-218ENST00000515460 TDRD3Q9H7E2 651 aaKnown RBP6.16□□□□□ -1.42
NUP54-218ENST00000515460 VEZTQ9HBM0 779 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 MSL2Q9HCI7 577 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 CABP5Q9NP86 173 aa6.16□□□□□ -1.42
NUP54-218ENST00000515460 ZNF70Q9UC06 446 aaPredicted RBP6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms