RNA–Protein interactions for RNA: ENST00000512431.5

DDX41-215, Transcript of DEAD-box helicase 41, human

TSL 5

Gene DDX41, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX41-215	ENST00000512431	NUP210	Q8TEM1	1887 aa	Predicted RBP	13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	OTOL1	A6NHN0	477 aa	Predicted RBP	13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	PATE3	B3GLJ2	98 aa		13.63	□□□□□ -0.23
DDX41-215	ENST00000512431		H0Y626	953 aa		13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	TAF4	O00268	1085 aa		13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	ABLIM1	O14639	778 aa		13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	HIP1R	O75146	1068 aa		13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	TRIM16	O95361	564 aa		13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	CTDNEP1	O95476	244 aa		13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	CLTA	P09496	248 aa		13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	CXCL8	P10145	99 aa		13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	ARSA	P15289	507 aa		13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	PAX3	P23760	479 aa		13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	GJA4	P35212	333 aa		13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	AARS	P49588	968 aa	Known RBP eCLIP	13.63	□□□□□ -0.23	4e-6	■■□□□ 13.1
DDX41-215	ENST00000512431	PPP2R3A	Q06190	1150 aa		13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	SPAG1	Q07617	926 aa		13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	SAFB	Q15424	915 aa	Known RBP eCLIP	13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	SLC39A12	Q504Y0	691 aa		13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	TAS1R3	Q7RTX0	852 aa		13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	GIPC2	Q8TF65	315 aa		13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	MRPS31	Q92665	395 aa	Known RBP	13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	CD101	Q93033	1021 aa		13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	TPSD1	Q9BZJ3	242 aa		13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	IL21	Q9HBE4	155 aa		13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	DDX19A	Q9NUU7	478 aa	Known RBP	13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	DNM3	Q9UQ16	869 aa		13.63	□□□□□ -0.23
DDX41-215	ENST00000512431	SLC16A4	O15374	487 aa		13.62	□□□□□ -0.23
DDX41-215	ENST00000512431	MEFV	O15553	781 aa	Predicted RBP	13.62	□□□□□ -0.23
DDX41-215	ENST00000512431	MAP3K13	O43283	966 aa		13.62	□□□□□ -0.23
DDX41-215	ENST00000512431	FDPS	P14324	419 aa	Known RBP	13.62	□□□□□ -0.23
DDX41-215	ENST00000512431	U2AF2	P26368	475 aa	Known RBP eCLIP	13.62	□□□□□ -0.23	2e-13	■■□□□ 14.3
DDX41-215	ENST00000512431	SMTN	P53814	917 aa		13.62	□□□□□ -0.23
DDX41-215	ENST00000512431	SMARCB1	Q12824	385 aa		13.62	□□□□□ -0.23
DDX41-215	ENST00000512431	NR1H3	Q13133	447 aa		13.62	□□□□□ -0.23
DDX41-215	ENST00000512431	ORC2	Q13416	577 aa	Predicted RBP	13.62	□□□□□ -0.23
DDX41-215	ENST00000512431	ANKRD1	Q15327	319 aa		13.62	□□□□□ -0.23
DDX41-215	ENST00000512431	KYAT1	Q16773	422 aa		13.62	□□□□□ -0.23
DDX41-215	ENST00000512431	METTL23	Q86XA0	190 aa		13.62	□□□□□ -0.23
DDX41-215	ENST00000512431	THEM5	Q8N1Q8	247 aa		13.62	□□□□□ -0.23
DDX41-215	ENST00000512431	SPPL2B	Q8TCT7	592 aa		13.62	□□□□□ -0.23
DDX41-215	ENST00000512431	C2orf15	Q8WU43	125 aa	Known RBP	13.62	□□□□□ -0.23
DDX41-215	ENST00000512431	USP13	Q92995	863 aa	Predicted RBP	13.62	□□□□□ -0.23
DDX41-215	ENST00000512431	ECT2	Q9H8V3	914 aa		13.62	□□□□□ -0.23
DDX41-215	ENST00000512431	LRWD1	Q9UFC0	647 aa		13.62	□□□□□ -0.23
DDX41-215	ENST00000512431	EVL	Q9UI08	416 aa	Predicted RBP	13.62	□□□□□ -0.23
DDX41-215	ENST00000512431	KLK13	Q9UKR3	277 aa		13.62	□□□□□ -0.23
DDX41-215	ENST00000512431	DSE	Q9UL01	958 aa		13.62	□□□□□ -0.23
DDX41-215	ENST00000512431	TBX20	Q9UMR3	447 aa		13.62	□□□□□ -0.23
DDX41-215	ENST00000512431	CCL26	Q9Y258	94 aa		13.62	□□□□□ -0.23
DDX41-215	ENST00000512431	TTC26	A0AVF1	554 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	ALDH1A2	O94788	518 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	SEC24B	O95487	1268 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	ATF6	P18850	670 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	MAPK8	P45983	427 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	IFNAR2	P48551	515 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	FOSB	P53539	338 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	ATXN3	P54252	364 aa	Predicted RBP	13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	LILRA4	P59901	499 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	SIM1	P81133	766 aa	Predicted RBP	13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	MCL1	Q07820	350 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	ZNF174	Q15697	407 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	ZBTB6	Q15916	424 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	ECM1	Q16610	540 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	TRIM61	Q5EBN2	209 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	LMBRD2	Q68DH5	695 aa	Predicted RBP	13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	ANO7	Q6IWH7	933 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	ZPBP2	Q6X784	338 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	LPCAT2	Q7L5N7	544 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	TTC30A	Q86WT1	665 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	HDDC3	Q8N4P3	179 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	TTC16	Q8NEE8	873 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	ATP2A3	Q93084	1043 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	COL26A1	Q96A83	441 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	SENP8	Q96LD8	212 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	TSPAN18	Q96SJ8	248 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	NTPCR	Q9BSD7	190 aa	Known RBP	13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	RAB34	Q9BZG1	259 aa		13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	DUS2	Q9NX74	493 aa	Known RBP	13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	KIF26A	Q9ULI4	1882 aa	Predicted RBP	13.61	□□□□□ -0.23
DDX41-215	ENST00000512431	SPAAR	A0A1B0GVQ0	90 aa		13.6	□□□□□ -0.23
DDX41-215	ENST00000512431	DPP6	P42658	865 aa		13.6	□□□□□ -0.23
DDX41-215	ENST00000512431	NLRP12	P59046	1061 aa		13.6	□□□□□ -0.23
DDX41-215	ENST00000512431	ZNF268	Q14587	947 aa	Predicted RBP	13.6	□□□□□ -0.23
DDX41-215	ENST00000512431	MTF1	Q14872	753 aa		13.6	□□□□□ -0.23
DDX41-215	ENST00000512431	TXNDC8	Q6A555	127 aa		13.6	□□□□□ -0.23
DDX41-215	ENST00000512431	MON1A	Q86VX9	555 aa		13.6	□□□□□ -0.23
DDX41-215	ENST00000512431	DAW1	Q8N136	415 aa		13.6	□□□□□ -0.23
DDX41-215	ENST00000512431	OR10T2	Q8NGX3	314 aa		13.6	□□□□□ -0.23
DDX41-215	ENST00000512431	SNX29	Q8TEQ0	813 aa		13.6	□□□□□ -0.23
DDX41-215	ENST00000512431	BICD1	Q96G01	975 aa		13.6	□□□□□ -0.23
DDX41-215	ENST00000512431	SPACA7	Q96KW9	195 aa		13.6	□□□□□ -0.23
DDX41-215	ENST00000512431	CNOT6L	Q96LI5	555 aa	Known RBP	13.6	□□□□□ -0.23
DDX41-215	ENST00000512431	TIPIN	Q9BVW5	301 aa		13.6	□□□□□ -0.23
DDX41-215	ENST00000512431	ZCWPW1	Q9H0M4	648 aa		13.6	□□□□□ -0.23
DDX41-215	ENST00000512431	EML5	Q05BV3	1969 aa		13.6	□□□□□ -0.23
DDX41-215	ENST00000512431	CIT	O14578	2027 aa		13.59	□□□□□ -0.23
DDX41-215	ENST00000512431	SFI1	A8K8P3	1242 aa		13.59	□□□□□ -0.23
DDX41-215	ENST00000512431	LACTBL1	A8MY62	500 aa		13.59	□□□□□ -0.23

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