RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 ARID3BQ8IVW6 561 aaPredicted RBP14.02□□□□□ -0.17
HMGCS1-205ENST00000508319 SYCP3Q8IZU3 236 aa14.02□□□□□ -0.17
HMGCS1-205ENST00000508319 THEM5Q8N1Q8 247 aa14.02□□□□□ -0.17
HMGCS1-205ENST00000508319 PDCL2Q8N4E4 241 aa14.02□□□□□ -0.17
HMGCS1-205ENST00000508319 SPPL2BQ8TCT7 592 aa14.02□□□□□ -0.17
HMGCS1-205ENST00000508319 KCNG4Q8TDN1 519 aa14.02□□□□□ -0.17
HMGCS1-205ENST00000508319 C2orf15Q8WU43 125 aaKnown RBP14.02□□□□□ -0.17
HMGCS1-205ENST00000508319 HPS3Q969F9 1004 aa14.02□□□□□ -0.17
HMGCS1-205ENST00000508319 E2F7Q96AV8 911 aa14.02□□□□□ -0.17
HMGCS1-205ENST00000508319 LRRC3BQ96PB8 259 aa14.02□□□□□ -0.17
HMGCS1-205ENST00000508319 TRIM9Q9C026 710 aa14.02□□□□□ -0.17
HMGCS1-205ENST00000508319 IL21Q9HBE4 155 aa14.02□□□□□ -0.17
HMGCS1-205ENST00000508319 KBTBD4Q9NVX7 518 aa14.02□□□□□ -0.17
HMGCS1-205ENST00000508319 NDRG2Q9UN36 371 aaKnown RBP14.02□□□□□ -0.17
HMGCS1-205ENST00000508319 PTPRJQ12913 1337 aa14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 EXTL3O43909 919 aa14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 PRAMEF12O95522 483 aa14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 CYP4F8P98187 520 aa14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 SMARCB1Q12824 385 aa14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 MTAPQ13126 283 aa14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 GPR158Q5T848 1215 aa14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 CCDC65Q8IXS2 484 aa14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 LRRC52Q8N7C0 313 aa14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 NELL1Q92832 810 aa14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 SNX21Q969T3 373 aa14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 MTMR12Q9C0I1 747 aa14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 CHRDQ9H2X0 955 aa14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 ATXN3LQ9H3M9 355 aa14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 PCIF1Q9H4Z3 704 aa14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 TMEM206Q9H813 350 aa14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 PDE11AQ9HCR9 933 aa14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 TMLHEQ9NVH6 421 aa14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 ABI2Q9NYB9 513 aaPredicted RBP14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 SIX4Q9UIU6 781 aa14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 ITGA11Q9UKX5 1188 aa14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 L1RE1Q9UN81 338 aa14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 AGAP1Q9UPQ3 857 aa14.01□□□□□ -0.17
HMGCS1-205ENST00000508319 SLC38A8A6NNN8 435 aa14□□□□□ -0.17
HMGCS1-205ENST00000508319 CHADO15335 359 aa14□□□□□ -0.17
HMGCS1-205ENST00000508319 YEATS4O95619 227 aa14□□□□□ -0.17
HMGCS1-205ENST00000508319 HAPLN1P10915 354 aaPredicted RBP14□□□□□ -0.17
HMGCS1-205ENST00000508319 CDC25CP30307 473 aa14□□□□□ -0.17
HMGCS1-205ENST00000508319 HOXD13P35453 343 aa14□□□□□ -0.17
HMGCS1-205ENST00000508319 CSTF1Q05048 431 aaKnown RBP14□□□□□ -0.17
HMGCS1-205ENST00000508319 VEPH1Q14D04 833 aa14□□□□□ -0.17
HMGCS1-205ENST00000508319 SHC4Q6S5L8 630 aa14□□□□□ -0.17
HMGCS1-205ENST00000508319 GPIHBP1Q8IV16 184 aa14□□□□□ -0.17
HMGCS1-205ENST00000508319 DCP1BQ8IZD4 617 aaKnown RBP14□□□□□ -0.17
HMGCS1-205ENST00000508319 GPD1LQ8N335 351 aa14□□□□□ -0.17
HMGCS1-205ENST00000508319 SUMF1Q8NBK3 374 aa14□□□□□ -0.17
HMGCS1-205ENST00000508319 ZBTB44Q8NCP5 570 aa14□□□□□ -0.17
HMGCS1-205ENST00000508319 FAM200AQ8TCP9 573 aa14□□□□□ -0.17
HMGCS1-205ENST00000508319 LEO1Q8WVC0 666 aaPredicted RBP14□□□□□ -0.17
HMGCS1-205ENST00000508319 FAM3CQ92520 227 aa14□□□□□ -0.17
HMGCS1-205ENST00000508319 PKMYT1Q99640 499 aa14□□□□□ -0.17
HMGCS1-205ENST00000508319 CUEDC2Q9H467 287 aa14□□□□□ -0.17
HMGCS1-205ENST00000508319 TASP1Q9H6P5 420 aa14□□□□□ -0.17
HMGCS1-205ENST00000508319 GDAP2Q9NXN4 497 aa14□□□□□ -0.17
HMGCS1-205ENST00000508319 OBP2AQ9NY56 170 aa14□□□□□ -0.17
HMGCS1-205ENST00000508319 TFIP11Q9UBB9 837 aaKnown RBP14□□□□□ -0.17
HMGCS1-205ENST00000508319 PCDHGA2Q9Y5H1 932 aa14□□□□□ -0.17
HMGCS1-205ENST00000508319 KIAA0391O15091 583 aaKnown RBP13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 KINO60870 393 aaKnown RBP13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 CUTAO60888 179 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 TDGF1P13385 188 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 HMGA1P17096 107 aaKnown RBP13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 WEE1P30291 646 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 SOX9P48436 509 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 MLLT6P55198 1093 aaPredicted RBP13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 TSPY1Q01534 308 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 BFSP1Q12934 665 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 CCDC142Q17RM4 750 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 ARHGAP15Q53QZ3 475 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 WDR44Q5JSH3 913 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 FOXD4L5Q5VV16 416 aaPredicted RBP13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 LMBRD2Q68DH5 695 aaPredicted RBP13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 CNNM4Q6P4Q7 775 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 TSSK4Q6SA08 328 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 EPM2AIP1Q7L775 607 aaPredicted RBP13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 TMEM150AQ86TG1 271 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 CBWD2Q8IUF1 395 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 YAF2Q8IY57 180 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 TMEM86AQ8N2M4 240 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 CSGALNACT2Q8N6G5 542 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 STKLD1Q8NE28 680 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 CSGALNACT1Q8TDX6 532 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 GIPC2Q8TF65 315 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 NOC3LQ8WTT2 800 aaKnown RBP13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 CACTINQ8WUQ7 758 aaKnown RBP13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 FOXD4L4Q8WXT5 416 aaPredicted RBP13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 DHX58Q96C10 678 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 ZFYVE19Q96K21 471 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 ZNF396Q96N95 335 aaPredicted RBP13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 GCNAQ96QF7 691 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 ACBD6Q9BR61 282 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 INTS13Q9NVM9 706 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 DDX43Q9NXZ2 648 aaKnown RBP13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 PCDHB5Q9Y5E4 795 aa13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 ZNF638Q14966 1978 aaKnown RBP13.99□□□□□ -0.17
HMGCS1-205ENST00000508319 PTPRDP23468 1912 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms