RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 CST3P01034 146 aaPredicted RBP12.66□□□□□ -0.38
NUP54-202ENST00000502850 KRT7P08729 469 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 BRD2P25440 801 aaKnown RBP12.66□□□□□ -0.38
NUP54-202ENST00000502850 TMOD1P28289 359 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 ASPAP45381 313 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 ITGA8P53708 1063 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 TAS2R40P59535 323 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 SLC20A2Q08357 652 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 SNAPC2Q13487 334 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 HADHQ16836 314 aaKnown RBP12.66□□□□□ -0.38
NUP54-202ENST00000502850 SEZ6Q53EL9 994 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 ZFYVE27Q5T4F4 411 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 GSTA5Q7RTV2 222 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 APBB1IPQ7Z5R6 666 aaPredicted RBP12.66□□□□□ -0.38
NUP54-202ENST00000502850 TRIM50Q86XT4 487 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 NT5DC4Q86YG4 428 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 C10orf67Q8IYJ2 551 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 MCEEQ96PE7 176 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 SLITRK1Q96PX8 696 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 BCO2Q9BYV7 579 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 NSRP1Q9H0G5 558 aaKnown RBP12.66□□□□□ -0.38
NUP54-202ENST00000502850 CDT1Q9H211 546 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 VRTNQ9H8Y1 702 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 MCM3APO60318 1980 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 TCRBV5S1A1TA0A578 114 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 TLDC2A0PJX2 215 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 MEFVO15553 781 aaPredicted RBP12.66□□□□□ -0.38
NUP54-202ENST00000502850 TRPA1O75762 1119 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 C22orf31O95567 290 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 TTC4O95801 387 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 GH1P01241 217 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 CFHP08603 1231 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 ACAP1Q15027 740 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 TNFAIP8L3Q5GJ75 292 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 TFDP3Q5H9I0 405 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 PPP1R15BQ5SWA1 713 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 ERMARDQ5T6L9 678 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 GKAP1Q5VSY0 366 aaPredicted RBP12.66□□□□□ -0.38
NUP54-202ENST00000502850 WDR78Q5VTH9 848 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 TADA2BQ86TJ2 420 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 THNSL1Q8IYQ7 743 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 RIBC1Q8N443 379 aaPredicted RBP12.66□□□□□ -0.38
NUP54-202ENST00000502850 OTUD6BQ8N6M0 293 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 TTC13Q8NBP0 860 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 ATG4AQ8WYN0 398 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 RAPGEF5Q92565 580 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 EMID1Q96A84 441 aaPredicted RBP12.66□□□□□ -0.38
NUP54-202ENST00000502850 CLMNQ96JQ2 1002 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 TTC25Q96NG3 672 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 XPO6Q96QU8 1125 aaKnown RBP12.66□□□□□ -0.38
NUP54-202ENST00000502850 SELENOSQ9BQE4 189 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 XYLT2Q9H1B5 865 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 CCDC134Q9H6E4 229 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 TXNRD2Q9NNW7 524 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 RNF186Q9NXI6 227 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 SAGE1Q9NXZ1 904 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 DRG1Q9Y295 367 aaKnown RBP12.66□□□□□ -0.38
NUP54-202ENST00000502850 NEU2Q9Y3R4 380 aa12.66□□□□□ -0.38
NUP54-202ENST00000502850 RALGAPA2Q2PPJ7 1873 aa12.65□□□□□ -0.38
NUP54-202ENST00000502850 TTLL13PA6NNM8 815 aa12.65□□□□□ -0.38
NUP54-202ENST00000502850 LIASO43766 372 aa12.65□□□□□ -0.38
NUP54-202ENST00000502850 PEX10O60683 326 aa12.65□□□□□ -0.38
NUP54-202ENST00000502850 CPP00450 1065 aa12.65□□□□□ -0.38
NUP54-202ENST00000502850 ABHD2P08910 425 aa12.65□□□□□ -0.38
NUP54-202ENST00000502850 IVDP26440 423 aa12.65□□□□□ -0.38
NUP54-202ENST00000502850 MOGSQ13724 837 aa12.65□□□□□ -0.38
NUP54-202ENST00000502850 SKIDA1Q1XH10 827 aa12.65□□□□□ -0.38
NUP54-202ENST00000502850 C2CD6Q53TS8 623 aa12.65□□□□□ -0.38
NUP54-202ENST00000502850 IZUMO3Q5VZ72 239 aa12.65□□□□□ -0.38
NUP54-202ENST00000502850 SPOCD1Q6ZMY3 1216 aa12.65□□□□□ -0.38
NUP54-202ENST00000502850 ZNF467Q7Z7K2 595 aaPredicted RBP12.65□□□□□ -0.38
NUP54-202ENST00000502850 PHLDB2Q86SQ0 1253 aa12.65□□□□□ -0.38
NUP54-202ENST00000502850 CHMP6Q96FZ7 201 aa12.65□□□□□ -0.38
NUP54-202ENST00000502850 ABHD8Q96I13 439 aa12.65□□□□□ -0.38
NUP54-202ENST00000502850 HEMGNQ9BXL5 484 aa12.65□□□□□ -0.38
NUP54-202ENST00000502850 PHACTR1Q9C0D0 580 aa12.65□□□□□ -0.38
NUP54-202ENST00000502850 PPCSQ9HAB8 311 aa12.65□□□□□ -0.38
NUP54-202ENST00000502850 SLC45A1Q9Y2W3 748 aa12.65□□□□□ -0.38
NUP54-202ENST00000502850 SIGLEC16A6NMB1 481 aa12.64□□□□□ -0.39
NUP54-202ENST00000502850 STAU1O95793 577 aaKnown RBP12.64□□□□□ -0.39
NUP54-202ENST00000502850 KRT19P08727 400 aa12.64□□□□□ -0.39
NUP54-202ENST00000502850 WEE2P0C1S8 567 aa12.64□□□□□ -0.39
NUP54-202ENST00000502850 CD19P15391 556 aa12.64□□□□□ -0.39
NUP54-202ENST00000502850 GJC1P36383 396 aa12.64□□□□□ -0.39
NUP54-202ENST00000502850 CLCN3P51790 818 aa12.64□□□□□ -0.39
NUP54-202ENST00000502850 SEC24CP53992 1094 aa12.64□□□□□ -0.39
NUP54-202ENST00000502850 RPL7AP62424 266 aaKnown RBP12.64□□□□□ -0.39
NUP54-202ENST00000502850 IRX5P78411 483 aaPredicted RBP12.64□□□□□ -0.39
NUP54-202ENST00000502850 ARHGAP1Q07960 439 aa12.64□□□□□ -0.39
NUP54-202ENST00000502850 NR1H3Q13133 447 aa12.64□□□□□ -0.39
NUP54-202ENST00000502850 STAT4Q14765 748 aa12.64□□□□□ -0.39
NUP54-202ENST00000502850 LLGL2Q6P1M3 1020 aa12.64□□□□□ -0.39
NUP54-202ENST00000502850 SCARA5Q6ZMJ2 495 aa12.64□□□□□ -0.39
NUP54-202ENST00000502850 ARMCX2Q7L311 632 aa12.64□□□□□ -0.39
NUP54-202ENST00000502850 CPLX4Q7Z7G2 160 aa12.64□□□□□ -0.39
NUP54-202ENST00000502850 PCGF5Q86SE9 256 aa12.64□□□□□ -0.39
NUP54-202ENST00000502850 CACNA2D3Q8IZS8 1091 aa12.64□□□□□ -0.39
NUP54-202ENST00000502850 ZCCHC9Q8N567 271 aaKnown RBP12.64□□□□□ -0.39
NUP54-202ENST00000502850 GPRC5AQ8NFJ5 357 aa12.64□□□□□ -0.39
NUP54-202ENST00000502850 PPTC7Q8NI37 304 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms