RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 HOXA11P31270 313 aaPredicted RBP10.9□□□□□ -0.66
HDAC3-214ENST00000495485 CD52P31358 61 aa10.9□□□□□ -0.66
HDAC3-214ENST00000495485 WDR5P61964 334 aaKnown RBP10.9□□□□□ -0.66
HDAC3-214ENST00000495485 C1QBPQ07021 282 aaKnown RBP10.9□□□□□ -0.66
HDAC3-214ENST00000495485 NFX1Q12986 1120 aaKnown RBP10.9□□□□□ -0.66
HDAC3-214ENST00000495485 BRD3Q15059 726 aa10.9□□□□□ -0.66
HDAC3-214ENST00000495485 SHHQ15465 462 aa10.9□□□□□ -0.66
HDAC3-214ENST00000495485 TWF2Q6IBS0 349 aaKnown RBP10.9□□□□□ -0.66
HDAC3-214ENST00000495485 OTOP2Q7RTS6 562 aa10.9□□□□□ -0.66
HDAC3-214ENST00000495485 FAM228AQ86W67 206 aa10.9□□□□□ -0.66
HDAC3-214ENST00000495485 PHF13Q86YI8 300 aaPredicted RBP10.9□□□□□ -0.66
HDAC3-214ENST00000495485 MCOLN2Q8IZK6 566 aa10.9□□□□□ -0.66
HDAC3-214ENST00000495485 C1orf127Q8N9H9 656 aa10.9□□□□□ -0.66
HDAC3-214ENST00000495485 LRRC57Q8N9N7 239 aa10.9□□□□□ -0.66
HDAC3-214ENST00000495485 ZNF564Q8TBZ8 553 aaPredicted RBP10.9□□□□□ -0.66
HDAC3-214ENST00000495485 ZNF606Q8WXB4 792 aa10.9□□□□□ -0.66
HDAC3-214ENST00000495485 TOP1MTQ969P6 601 aa10.9□□□□□ -0.66
HDAC3-214ENST00000495485 VWCEQ96DN2 955 aa10.9□□□□□ -0.66
HDAC3-214ENST00000495485 SNX27Q96L92 541 aa10.9□□□□□ -0.66
HDAC3-214ENST00000495485 AGO3Q9H9G7 860 aaKnown RBP10.9□□□□□ -0.66
HDAC3-214ENST00000495485 UBN1Q9NPG3 1134 aa10.9□□□□□ -0.66
HDAC3-214ENST00000495485 SNTG2Q9NY99 539 aa10.9□□□□□ -0.66
HDAC3-214ENST00000495485 CNTN3Q9P232 1028 aa10.9□□□□□ -0.66
HDAC3-214ENST00000495485 CNOT8Q9UFF9 292 aaKnown RBP10.9□□□□□ -0.66
HDAC3-214ENST00000495485 PCDHGC3Q9UN70 934 aa10.9□□□□□ -0.66
HDAC3-214ENST00000495485 COLQQ9Y215 455 aaPredicted RBP10.9□□□□□ -0.66
HDAC3-214ENST00000495485 NOC2LQ9Y3T9 749 aaKnown RBP10.9□□□□□ -0.66
HDAC3-214ENST00000495485 INSL6Q9Y581 213 aa10.9□□□□□ -0.66
HDAC3-214ENST00000495485 PCDHA11Q9Y5I1 949 aa10.9□□□□□ -0.66
HDAC3-214ENST00000495485 CHD7Q9P2D1 2997 aa10.9□□□□□ -0.66
HDAC3-214ENST00000495485 A0A0U1RQF3 1178 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 TARSL2A2RTX5 802 aaKnown RBP10.89□□□□□ -0.67
HDAC3-214ENST00000495485 CCDC66A2RUB6 948 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 CCDC188H7C350 402 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 MYO1FO00160 1098 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 ENPP3O14638 875 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 KCNK3O14649 394 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 BUB1BO60566 1050 aaPredicted RBP10.89□□□□□ -0.67
HDAC3-214ENST00000495485 GJB5O95377 273 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 VDRP11473 427 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 KCNE1P15382 129 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 DESP17661 470 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 CD58P19256 250 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 FGFR4P22455 802 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 CETN2P41208 172 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 ZNF132P52740 706 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 EPHB4P54760 987 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 TMCO3Q6UWJ1 677 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 NT5DC3Q86UY8 548 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 CREG2Q8IUH2 290 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 NPAS4Q8IUM7 802 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 MMGT1Q8N4V1 131 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 UBR7Q8N806 425 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.89□□□□□ -0.67
HDAC3-214ENST00000495485 ACTRT1Q8TDG2 376 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 TMEM40Q8WWA1 233 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 MAIP1Q8WWC4 291 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 PGBD4Q96DM1 585 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 TMEM176AQ96HP8 235 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 HES6Q96HZ4 224 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 MMS19Q96T76 1030 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 PCDHB18PQ96TA0 734 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 RAD9AQ99638 391 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 ARID3AQ99856 593 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 NUP85Q9BW27 656 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 XYLT2Q9H1B5 865 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 LHX5Q9H2C1 402 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 CDHR5Q9HBB8 845 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 ABCB6Q9NP58 842 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 PARVAQ9NVD7 372 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 TAS2R14Q9NYV8 317 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 ADAM22Q9P0K1 906 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 WDR35Q9P2L0 1181 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.89□□□□□ -0.67
HDAC3-214ENST00000495485 MSRAQ9UJ68 235 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 RWDD3Q9Y3V2 267 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 V9GYY5 206 aaPredicted RBP10.89□□□□□ -0.67
HDAC3-214ENST00000495485 FNDC1Q4ZHG4 1894 aaPredicted RBP10.89□□□□□ -0.67
HDAC3-214ENST00000495485 GBF1Q92538 1859 aa10.89□□□□□ -0.67
HDAC3-214ENST00000495485 PTPRSQ13332 1948 aa10.88□□□□□ -0.67
HDAC3-214ENST00000495485 GOLGA6L10A0A0M3HER8 536 aa10.88□□□□□ -0.67
HDAC3-214ENST00000495485 CCDC151A5D8V7 595 aa10.88□□□□□ -0.67
HDAC3-214ENST00000495485 PGRMC1O00264 195 aaKnown RBP10.88□□□□□ -0.67
HDAC3-214ENST00000495485 ATP8B1O43520 1251 aa10.88□□□□□ -0.67
HDAC3-214ENST00000495485 SPOPO43791 374 aa10.88□□□□□ -0.67
HDAC3-214ENST00000495485 SRGAP2O75044 1071 aa10.88□□□□□ -0.67
HDAC3-214ENST00000495485 ITGA4P13612 1032 aa10.88□□□□□ -0.67
HDAC3-214ENST00000495485 CD19P15391 556 aa10.88□□□□□ -0.67
HDAC3-214ENST00000495485 ASPAP45381 313 aa10.88□□□□□ -0.67
HDAC3-214ENST00000495485 FAM189BP81408 668 aa10.88□□□□□ -0.67
HDAC3-214ENST00000495485 DSC3Q14574 896 aa10.88□□□□□ -0.67
HDAC3-214ENST00000495485 MESDQ14696 234 aa10.88□□□□□ -0.67
HDAC3-214ENST00000495485 SV2CQ496J9 727 aa10.88□□□□□ -0.67
HDAC3-214ENST00000495485 C9orf50Q5SZB4 431 aa10.88□□□□□ -0.67
HDAC3-214ENST00000495485 SEL1L2Q5TEA6 688 aa10.88□□□□□ -0.67
HDAC3-214ENST00000495485 NAA35Q5VZE5 725 aa10.88□□□□□ -0.67
HDAC3-214ENST00000495485 FAM109BQ6ICB4 259 aaPredicted RBP10.88□□□□□ -0.67
HDAC3-214ENST00000495485 UNC93AQ86WB7 457 aa10.88□□□□□ -0.67
HDAC3-214ENST00000495485 ERICH1Q86X53 443 aa10.88□□□□□ -0.67
HDAC3-214ENST00000495485 TMEM192Q8IY95 271 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms