RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 NLRP9Q7RTR0 991 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 AMIGO3Q86WK7 504 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 SCN4BQ8IWT1 228 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 FBXO16Q8IX29 292 aaPredicted RBP17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 OSBPL8Q9BZF1 889 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 SLC4A1P02730 911 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 GARSP41250 739 aaKnown RBP17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 ORC1Q13415 861 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 TMEM132DQ14C87 1099 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 SMTNL2Q2TAL5 461 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 SPOPLQ6IQ16 392 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 AFAP1L2Q8N4X5 818 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 ATP11CQ8NB49 1132 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 ACSF2Q96CM8 615 aaPredicted RBP17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 RANBP17Q9H2T7 1088 aaKnown RBP17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 GTF3C4Q9UKN8 822 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 SEC23IPQ9Y6Y8 1000 aaKnown RBP17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 TNPO2O14787 897 aaKnown RBP17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 LCP1P13796 627 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 MAGEA4P43358 317 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 CNTN2Q02246 1040 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 TAF1CQ15572 869 aaPredicted RBP17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 ECM1Q16610 540 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 SLC47A2Q86VL8 602 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 MRIQ9BWK5 157 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 OSBPL7Q9BZF2 842 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 H3BRJ5 948 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 HBP1O60381 514 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 GSTA2P09210 222 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 CTSHP09668 335 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 CYP11B1P15538 503 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 NLRP11P59045 1033 aaKnown RBP17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 SNRPFP62306 86 aaKnown RBP17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 NME3Q13232 169 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 HIC1Q14526 733 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 ZNF662Q6ZS27 426 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 SLC13A5Q86YT5 568 aaPredicted RBP17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 GPRC5AQ8NFJ5 357 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 SERPINI1Q99574 410 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 MTMR12Q9C0I1 747 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 NIF3L1Q9GZT8 377 aa17.09■□□□□ 0.33
CCDC88B-209ENST00000494080 SNX3O60493 162 aa17.08■□□□□ 0.33
CCDC88B-209ENST00000494080 ALDH18A1P54886 795 aaKnown RBP17.08■□□□□ 0.33
CCDC88B-209ENST00000494080 PTENP60484 403 aa17.08■□□□□ 0.33
CCDC88B-209ENST00000494080 NUDCD3Q8IVD9 361 aa17.08■□□□□ 0.33
CCDC88B-209ENST00000494080 DCLK2Q8N568 766 aa17.08■□□□□ 0.33
CCDC88B-209ENST00000494080 PARD3BQ8TEW8 1205 aa17.08■□□□□ 0.33
CCDC88B-209ENST00000494080 SNRNP27Q8WVK2 155 aaKnown RBP17.08■□□□□ 0.33
CCDC88B-209ENST00000494080 WDR18Q9BV38 432 aa17.08■□□□□ 0.33
CCDC88B-209ENST00000494080 KLHL8Q9P2G9 620 aaPredicted RBP17.08■□□□□ 0.33
CCDC88B-209ENST00000494080 C6orf222P0C671 652 aaPredicted RBP17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 FKBP1AP62942 108 aaKnown RBP17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 RBP5P82980 135 aa17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 CYP4A22Q5TCH4 519 aa17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 LRRC55Q6ZSA7 311 aa17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 IRF2BP1Q8IU81 584 aa17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 APLFQ8IW19 511 aaPredicted RBP17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 C1orf131Q8NDD1 294 aaKnown RBP17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 PGM2Q96G03 612 aa17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 NSL1Q96IY1 281 aa17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 MAP3K20Q9NYL2 800 aaKnown RBP17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 SIK3Q9Y2K2 1263 aa17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 NEU2Q9Y3R4 380 aa17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 CACNA2D1P54289 1103 aa17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 TRIP10Q15642 601 aa17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 KIAA1841Q6NSI8 718 aa17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 MAGEB18Q96M61 343 aa17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 LRFN2Q9ULH4 789 aa17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 ADAMTS3O15072 1205 aa17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 SHBGP04278 402 aa17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 XRCC4Q13426 336 aa17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 ART3Q13508 389 aa17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 ARL13BQ3SXY8 428 aa17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 CXorf38Q8TB03 319 aa17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 XAB2Q9HCS7 855 aaKnown RBP17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 PCDHGC5Q9Y5F6 944 aa17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 CHD2O14647 1828 aaKnown RBP17.08■□□□□ 0.32
CCDC88B-209ENST00000494080 ATP9AO75110 1047 aa17.07■□□□□ 0.32
CCDC88B-209ENST00000494080 DSG3P32926 999 aa17.07■□□□□ 0.32
CCDC88B-209ENST00000494080 CCNHP51946 323 aaPredicted RBP17.07■□□□□ 0.32
CCDC88B-209ENST00000494080 CUL2Q13617 745 aa17.07■□□□□ 0.32
CCDC88B-209ENST00000494080 ERO1BQ86YB8 467 aa17.07■□□□□ 0.32
CCDC88B-209ENST00000494080 UBA3Q8TBC4 463 aa17.07■□□□□ 0.32
CCDC88B-209ENST00000494080 ATG4AQ8WYN0 398 aa17.07■□□□□ 0.32
CCDC88B-209ENST00000494080 WWP1Q9H0M0 922 aa17.07■□□□□ 0.32
CCDC88B-209ENST00000494080 CHCHD3Q9NX63 227 aaKnown RBP17.07■□□□□ 0.32
CCDC88B-209ENST00000494080 AIPL1Q9NZN9 384 aa17.07■□□□□ 0.32
CCDC88B-209ENST00000494080 ATXN2Q99700 1313 aaKnown RBP17.07■□□□□ 0.32
CCDC88B-209ENST00000494080 MAGEB2O15479 319 aa17.07■□□□□ 0.32
CCDC88B-209ENST00000494080 KPNB1Q14974 876 aaKnown RBP17.07■□□□□ 0.32
CCDC88B-209ENST00000494080 HIF1AQ16665 826 aa17.07■□□□□ 0.32
CCDC88B-209ENST00000494080 MIIPQ5JXC2 388 aa17.07■□□□□ 0.32
CCDC88B-209ENST00000494080 DEPDC1BQ8WUY9 529 aa17.07■□□□□ 0.32
CCDC88B-209ENST00000494080 HEY2Q9UBP5 337 aa17.07■□□□□ 0.32
CCDC88B-209ENST00000494080 GPC4O75487 556 aa17.07■□□□□ 0.32
CCDC88B-209ENST00000494080 ZCWPW2Q504Y3 356 aa17.07■□□□□ 0.32
CCDC88B-209ENST00000494080 SNX30Q5VWJ9 437 aa17.07■□□□□ 0.32
CCDC88B-209ENST00000494080 DDX56Q9NY93 547 aaKnown RBP17.07■□□□□ 0.32
CCDC88B-209ENST00000494080 RALAP11233 206 aa17.06■□□□□ 0.32
CCDC88B-209ENST00000494080 ATP4AP20648 1035 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms