RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 TMEM200AQ86VY9 491 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 SGMS1Q86VZ5 419 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 CEP57Q86XR8 500 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 GATAD2AQ86YP4 633 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 GRAMD1CQ8IYS0 662 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 TNS4Q8IZW8 715 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 CRIPAKQ8N1N5 446 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 GALNT15Q8N3T1 639 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 FBXW8Q8N3Y1 598 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 B4GALNT2Q8NHY0 566 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 HUS1BQ8NHY5 278 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 ZNF671Q8TAW3 534 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 DIO2Q92813 273 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 SMARCE1Q969G3 411 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 C11orf24Q96F05 449 aaPredicted RBP4.48□□□□□ -1.69
BRCA1-220ENST00000492859 EDC3Q96F86 508 aaKnown RBP4.48□□□□□ -1.69
BRCA1-220ENST00000492859 PRAM1Q96QH2 718 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 FUT8Q9BYC5 575 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 B3GNT5Q9BYG0 378 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 TRIM2Q9C040 744 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 AP5M1Q9H0R1 490 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 TSPAN10Q9H1Z9 355 aaPredicted RBP4.48□□□□□ -1.69
BRCA1-220ENST00000492859 C19orf44Q9H6X5 657 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 SYNDIG1Q9H7V2 258 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 UCK1Q9HA47 277 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 SH2B1Q9NRF2 756 aaPredicted RBP4.48□□□□□ -1.69
BRCA1-220ENST00000492859 KCND1Q9NSA2 647 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 OR6C2Q9NZP2 312 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 LRFN1Q9P244 771 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 TLK1Q9UKI8 766 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 CORO2BQ9UQ03 480 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 SIK3Q9Y2K2 1263 aa4.48□□□□□ -1.69
BRCA1-220ENST00000492859 ROCK1Q13464 1354 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 KIF7Q2M1P5 1343 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 ZBED9Q6R2W3 1325 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 FRMD3A2A2Y4 597 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 OR5K4A6NMS3 321 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 RHPN2P1A8MT19 583 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 ZNF891A8MT65 544 aaPredicted RBP4.47□□□□□ -1.69
BRCA1-220ENST00000492859 AGAP14A8MT82 685 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 TARM1B6A8C7 271 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 DDX3XO00571 662 aaKnown RBP eCLIP4.47□□□□□ -1.691e-8■■■□□ 17.6
BRCA1-220ENST00000492859 ACKR2O00590 384 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 CYTH3O43739 400 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 SUSD5O60279 629 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 ULK1O75385 1050 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 PPM1BO75688 479 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 KLHL2O95198 593 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 GLAP06280 429 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 GJB1P08034 283 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 HMOX1P09601 288 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 UBTFL6P0CB48 400 aaPredicted RBP4.47□□□□□ -1.69
BRCA1-220ENST00000492859 TPBGLP0DKB5 382 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 ALADP13716 330 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 ANXA8P13928 327 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 GALP22466 123 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 IL13P35225 146 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 KRT2P35908 639 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 STAT5AP42229 794 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 RANBP1P43487 201 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 SCNN1BP51168 640 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 ZNF41P51814 821 aaPredicted RBP4.47□□□□□ -1.69
BRCA1-220ENST00000492859 GBX2P52951 348 aaPredicted RBP4.47□□□□□ -1.69
BRCA1-220ENST00000492859 RAD23AP54725 363 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 OTUD4Q01804 1114 aaKnown RBP4.47□□□□□ -1.69
BRCA1-220ENST00000492859 CREB5Q02930 508 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 TAP2Q03519 686 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 CLCQ05315 142 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 CHIT1Q13231 466 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 CUL1Q13616 776 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 CYLC2Q14093 348 aaPredicted RBP4.47□□□□□ -1.69
BRCA1-220ENST00000492859 NOLC1Q14978 699 aaKnown RBP eCLIP4.47□□□□□ -1.69
BRCA1-220ENST00000492859 PTPAQ15257 358 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 DLGAP5Q15398 846 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 SNCBQ16143 134 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 KYNUQ16719 465 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 TRIM61Q5EBN2 209 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 SLC9C2Q5TAH2 1124 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 GRTP1Q5TC63 336 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 ANXA8L1Q5VT79 327 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 SHEQ5VZ18 495 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 CES4AQ5XG92 561 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 GPR142Q7Z601 462 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 RABEPKQ7Z6M1 372 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 TADA2BQ86TJ2 420 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 TSPYL5Q86VY4 417 aaPredicted RBP4.47□□□□□ -1.69
BRCA1-220ENST00000492859 COL23A1Q86Y22 540 aaPredicted RBP4.47□□□□□ -1.69
BRCA1-220ENST00000492859 PSTKQ8IV42 348 aaKnown RBP4.47□□□□□ -1.69
BRCA1-220ENST00000492859 SULF2Q8IWU5 870 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 ZFPM1Q8IX07 1006 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 C12orf56Q8IXR9 622 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 CCDC150Q8NCX0 1101 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 FBXO18Q8NFZ0 1043 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 SPATA20Q8TB22 786 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 MYCBPAPQ8TBZ2 947 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 GRIN3AQ8TCU5 1115 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 GANCQ8TET4 914 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 CACTINQ8WUQ7 758 aaKnown RBP4.47□□□□□ -1.69
BRCA1-220ENST00000492859 TCP11Q8WWU5 503 aa4.47□□□□□ -1.69
BRCA1-220ENST00000492859 FAM149B1Q96BN6 582 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms