RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 DACH1Q9UI36 760 aa17.44■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 POLIQ9UNA4 740 aa17.44■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 CLUHO75153 1309 aa17.44■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 C19orf67A6NJJ6 358 aa17.43■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 GNA14O95837 355 aa17.43■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 ASS1P00966 412 aaKnown RBP17.43■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 FAM163BP0C2L3 166 aa17.43■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 P4HA1P13674 534 aa17.43■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 SSTR3P32745 418 aaPredicted RBP17.43■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 DUSP4Q13115 394 aa17.43■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 INTS6LQ5JSJ4 861 aaKnown RBP17.43■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 CCDC183Q5T5S1 534 aa17.43■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 SCARA5Q6ZMJ2 495 aa17.43■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 LRRTM3Q86VH5 581 aa17.43■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 ATAD1Q8NBU5 361 aa17.43■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 C2orf15Q8WU43 125 aaKnown RBP17.43■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 SLC35C1Q96A29 364 aa17.43■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 ELMO3Q96BJ8 720 aa17.43■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 RPGRIP1Q96KN7 1286 aa17.43■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 MRPL45Q9BRJ2 306 aaKnown RBP17.43■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 SRRTQ9BXP5 876 aaKnown RBP17.43■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 SNX25Q9H3E2 840 aa17.43■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 SMYD3Q9H7B4 428 aa17.43■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 NR2E1Q9Y466 385 aa17.43■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 YIPF1Q9Y548 306 aa17.43■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 LOC730098B7Z3J9 87 aa17.42■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 HCRTO43612 131 aa17.42■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 SP100P23497 879 aaPredicted RBP17.42■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 NOP14P78316 857 aaKnown RBP17.42■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 TWF1Q12792 350 aa17.42■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 CBWD6Q4V339 395 aa17.42■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 CBWD3Q5JTY5 395 aa17.42■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 CBWD5Q5RIA9 395 aa17.42■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 SPOPLQ6IQ16 392 aa17.42■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 GRASPQ7Z6J2 395 aaPredicted RBP17.42■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 GJD3Q8N144 294 aa17.42■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 CCDC150Q8NCX0 1101 aa17.42■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 FBXL13Q8NEE6 735 aa17.42■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 OR6B3Q8NGW1 331 aa17.42■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 SPPL2BQ8TCT7 592 aa17.42■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 SYT15Q9BQS2 421 aa17.42■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 PI4K2AQ9BTU6 479 aa17.42■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 CRISPLD1Q9H336 500 aa17.42■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 HSFX1Q9UBD0 423 aa17.42■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 CDH9Q9ULB4 789 aa17.42■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 LMO2P25791 158 aa17.41■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 GNL1P36915 607 aaPredicted RBP17.41■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 RAP1GAPP47736 663 aa17.41■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 MARSP56192 900 aaKnown RBP17.41■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 PLD1Q13393 1074 aa17.41■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 NFE2Q16621 373 aaPredicted RBP17.41■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 ELMOD1Q8N336 334 aa17.41■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 TTC9BQ8N6N2 239 aa17.41■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 TDRD5Q8NAT2 981 aaKnown RBP17.41■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 MED15Q96RN5 788 aa17.41■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 PKMYT1Q99640 499 aa17.41■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.41■□□□□ 0.384e-14■■■■■ 74.4
MSH5-SAPCD1-206ENST00000491552 TMLHEQ9NVH6 421 aa17.41■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 ABI2Q9NYB9 513 aaPredicted RBP17.41■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 USTQ9Y2C2 406 aa17.41■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 SLC27A5Q9Y2P5 690 aa17.41■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 PCDHB5Q9Y5E4 795 aa17.41■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 C2CD4DB7Z1M9 353 aa17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 PDGFRBP09619 1106 aa17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 CCDC192P0DO97 292 aa17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 ERCC5P28715 1186 aaPredicted RBP17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 ALDH1A3P47895 512 aa17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 TUFMP49411 452 aaKnown RBP17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 CDR1P51861 262 aa17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 CDH8P55286 799 aa17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 PSMC1P62191 440 aaKnown RBP17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 NTHL1P78549 312 aa17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 TPD52L1Q16890 204 aaPredicted RBP17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 MGAT5BQ3V5L5 792 aa17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 CT47A1Q5JQC4 288 aaPredicted RBP17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 SASS6Q6UVJ0 657 aa17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 TRIM59Q8IWR1 403 aa17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 SEMA4DQ92854 862 aa17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 SEPT5Q99719 369 aaPredicted RBP17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 SDCBP2Q9H190 292 aa17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 APOBEC3GQ9HC16 384 aaKnown RBP17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 CD320Q9NPF0 282 aa17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 HCFC1R1Q9NWW0 138 aa17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 RAB20Q9NX57 234 aa17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 DNMT3BQ9UBC3 853 aaKnown RBP17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 GTF3C4Q9UKN8 822 aa17.4■□□□□ 0.38
MSH5-SAPCD1-206ENST00000491552 MYBPHLA2RUH7 354 aa17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 A8MXQ7 604 aa17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 DLL1O00548 723 aa17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 N4BP1O75113 896 aaKnown RBP17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 SOAT2O75908 522 aa17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 FSHRP23945 695 aa17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 ASPAP45381 313 aa17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 FMO5P49326 533 aa17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 EPHB3P54753 998 aa17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 MAPRE1Q15691 268 aaKnown RBP17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 PABPC1LQ4VXU2 614 aaKnown RBP17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 FAM171BQ6P995 826 aa17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 GET4Q7L5D6 327 aaPredicted RBP17.39■□□□□ 0.37
MSH5-SAPCD1-206ENST00000491552 OTOP3Q7RTS5 596 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms