RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 PRAMEF12O95522 483 aa16.94■□□□□ 0.3
SMPD4-220ENST00000491319 ITGB3P05106 788 aa16.94■□□□□ 0.3
SMPD4-220ENST00000491319 CCNE1P24864 410 aa16.94■□□□□ 0.3
SMPD4-220ENST00000491319 ID4P47928 161 aa16.94■□□□□ 0.3
SMPD4-220ENST00000491319 SOX9P48436 509 aa16.94■□□□□ 0.3
SMPD4-220ENST00000491319 NASPP49321 788 aaPredicted RBP16.94■□□□□ 0.3
SMPD4-220ENST00000491319 TUFMP49411 452 aaKnown RBP16.94■□□□□ 0.3
SMPD4-220ENST00000491319 VEPH1Q14D04 833 aa16.94■□□□□ 0.3
SMPD4-220ENST00000491319 SCARA3Q6AZY7 606 aa16.94■□□□□ 0.3
SMPD4-220ENST00000491319 SYCP3Q8IZU3 236 aa16.94■□□□□ 0.3
SMPD4-220ENST00000491319 DCLK2Q8N568 766 aa16.94■□□□□ 0.3
SMPD4-220ENST00000491319 C1orf127Q8N9H9 656 aa16.94■□□□□ 0.3
SMPD4-220ENST00000491319 ZBTB44Q8NCP5 570 aa16.94■□□□□ 0.3
SMPD4-220ENST00000491319 SPPL2BQ8TCT7 592 aa16.94■□□□□ 0.3
SMPD4-220ENST00000491319 CSGALNACT1Q8TDX6 532 aa16.94■□□□□ 0.3
SMPD4-220ENST00000491319 GIPC2Q8TF65 315 aa16.94■□□□□ 0.3
SMPD4-220ENST00000491319 NOC3LQ8WTT2 800 aaKnown RBP16.94■□□□□ 0.3
SMPD4-220ENST00000491319 RUBCNQ92622 972 aa16.94■□□□□ 0.3
SMPD4-220ENST00000491319 ZFYVE19Q96K21 471 aa16.94■□□□□ 0.3
SMPD4-220ENST00000491319 LRRC3BQ96PB8 259 aa16.94■□□□□ 0.3
SMPD4-220ENST00000491319 PANK4Q9NVE7 773 aa16.94■□□□□ 0.3
SMPD4-220ENST00000491319 RBAKQ9NYW8 714 aaPredicted RBP16.94■□□□□ 0.3
SMPD4-220ENST00000491319 PCDHB13Q9Y5F0 798 aa16.94■□□□□ 0.3
SMPD4-220ENST00000491319 PCDHGA2Q9Y5H1 932 aa16.94■□□□□ 0.3
SMPD4-220ENST00000491319 MYO16Q9Y6X6 1858 aa16.94■□□□□ 0.3
SMPD4-220ENST00000491319 FGF19O95750 216 aa16.93■□□□□ 0.3
SMPD4-220ENST00000491319 HAPLN1P10915 354 aaPredicted RBP16.93■□□□□ 0.3
SMPD4-220ENST00000491319 GARTP22102 1010 aa16.93■□□□□ 0.3
SMPD4-220ENST00000491319 PNPLA4P41247 253 aa16.93■□□□□ 0.3
SMPD4-220ENST00000491319 ALCAMQ13740 583 aa16.93■□□□□ 0.3
SMPD4-220ENST00000491319 STK38Q15208 465 aa16.93■□□□□ 0.3
SMPD4-220ENST00000491319 ARHGAP15Q53QZ3 475 aa16.93■□□□□ 0.3
SMPD4-220ENST00000491319 PDCL2Q8N4E4 241 aa16.93■□□□□ 0.3
SMPD4-220ENST00000491319 STKLD1Q8NE28 680 aa16.93■□□□□ 0.3
SMPD4-220ENST00000491319 GLIS3Q8NEA6 775 aa16.93■□□□□ 0.3
SMPD4-220ENST00000491319 C2orf15Q8WU43 125 aaKnown RBP16.93■□□□□ 0.3
SMPD4-220ENST00000491319 ATRIPQ8WXE1 791 aa16.93■□□□□ 0.3
SMPD4-220ENST00000491319 NELL1Q92832 810 aa16.93■□□□□ 0.3
SMPD4-220ENST00000491319 BACH2Q9BYV9 841 aa16.93■□□□□ 0.3
SMPD4-220ENST00000491319 ZSCAN16Q9H4T2 348 aaPredicted RBP16.93■□□□□ 0.3
SMPD4-220ENST00000491319 PCIF1Q9H4Z3 704 aa16.93■□□□□ 0.3
SMPD4-220ENST00000491319 LMAN1LQ9HAT1 526 aa16.93■□□□□ 0.3
SMPD4-220ENST00000491319 TMLHEQ9NVH6 421 aa16.93■□□□□ 0.3
SMPD4-220ENST00000491319 ZSCAN32Q9NX65 697 aa16.93■□□□□ 0.3
SMPD4-220ENST00000491319 L1RE1Q9UN81 338 aa16.93■□□□□ 0.3
SMPD4-220ENST00000491319 AGAP1Q9UPQ3 857 aa16.93■□□□□ 0.3
SMPD4-220ENST00000491319 KIAA1549LQ6ZVL6 1849 aa16.92■□□□□ 0.3
SMPD4-220ENST00000491319 DPYSL4O14531 572 aa16.92■□□□□ 0.3
SMPD4-220ENST00000491319 LILRB5O75023 590 aa16.92■□□□□ 0.3
SMPD4-220ENST00000491319 LDHAP00338 332 aaKnown RBP16.92■□□□□ 0.3
SMPD4-220ENST00000491319 CDC25CP30307 473 aa16.92■□□□□ 0.3
SMPD4-220ENST00000491319 GPR15P49685 360 aa16.92■□□□□ 0.3
SMPD4-220ENST00000491319 BFSP1Q12934 665 aa16.92■□□□□ 0.3
SMPD4-220ENST00000491319 WDR44Q5JSH3 913 aa16.92■□□□□ 0.3
SMPD4-220ENST00000491319 DCP1BQ8IZD4 617 aaKnown RBP16.92■□□□□ 0.3
SMPD4-220ENST00000491319 TTC8Q8TAM2 541 aa16.92■□□□□ 0.3
SMPD4-220ENST00000491319 CXorf38Q8TB03 319 aa16.92■□□□□ 0.3
SMPD4-220ENST00000491319 HPS3Q969F9 1004 aa16.92■□□□□ 0.3
SMPD4-220ENST00000491319 GCNAQ96QF7 691 aa16.92■□□□□ 0.3
SMPD4-220ENST00000491319 MTMR12Q9C0I1 747 aa16.92■□□□□ 0.3
SMPD4-220ENST00000491319 SMG9Q9H0W8 520 aaKnown RBP16.92■□□□□ 0.3
SMPD4-220ENST00000491319 TASP1Q9H6P5 420 aa16.92■□□□□ 0.3
SMPD4-220ENST00000491319 PDE11AQ9HCR9 933 aa16.92■□□□□ 0.3
SMPD4-220ENST00000491319 GTSE1Q9NYZ3 720 aa16.92■□□□□ 0.3
SMPD4-220ENST00000491319 SPAG17Q6Q759 2223 aa16.92■□□□□ 0.3
SMPD4-220ENST00000491319 EXTL3O43909 919 aa16.91■□□□□ 0.3
SMPD4-220ENST00000491319 CHRNB1P11230 501 aa16.91■□□□□ 0.3
SMPD4-220ENST00000491319 TDGF1P13385 188 aa16.91■□□□□ 0.3
SMPD4-220ENST00000491319 ACAT1P24752 427 aaKnown RBP16.91■□□□□ 0.3
SMPD4-220ENST00000491319 KPNA1P52294 538 aaPredicted RBP16.91■□□□□ 0.3
SMPD4-220ENST00000491319 TSPY1Q01534 308 aa16.91■□□□□ 0.3
SMPD4-220ENST00000491319 SMARCB1Q12824 385 aa16.91■□□□□ 0.3
SMPD4-220ENST00000491319 GAS6Q14393 721 aa16.91■□□□□ 0.3
SMPD4-220ENST00000491319 TAF12Q16514 161 aa16.91■□□□□ 0.3
SMPD4-220ENST00000491319 CCDC142Q17RM4 750 aa16.91■□□□□ 0.3
SMPD4-220ENST00000491319 LMBRD2Q68DH5 695 aaPredicted RBP16.91■□□□□ 0.3
SMPD4-220ENST00000491319 TXNDC11Q6PKC3 985 aa16.91■□□□□ 0.3
SMPD4-220ENST00000491319 CCDC65Q8IXS2 484 aa16.91■□□□□ 0.3
SMPD4-220ENST00000491319 LINC00301Q8NCQ3 95 aa16.91■□□□□ 0.3
SMPD4-220ENST00000491319 RMDN1Q96DB5 314 aa16.91■□□□□ 0.3
SMPD4-220ENST00000491319 MSANTD3Q96H12 275 aa16.91■□□□□ 0.3
SMPD4-220ENST00000491319 IER2Q9BTL4 223 aa16.91■□□□□ 0.3
SMPD4-220ENST00000491319 PI4K2AQ9BTU6 479 aa16.91■□□□□ 0.3
SMPD4-220ENST00000491319 OBP2AQ9NY56 170 aa16.91■□□□□ 0.3
SMPD4-220ENST00000491319 SIX4Q9UIU6 781 aa16.91■□□□□ 0.3
SMPD4-220ENST00000491319 ITGA11Q9UKX5 1188 aa16.91■□□□□ 0.3
SMPD4-220ENST00000491319 SMG5Q9UPR3 1016 aaKnown RBP16.91■□□□□ 0.3
SMPD4-220ENST00000491319 PCDHB5Q9Y5E4 795 aa16.91■□□□□ 0.3
SMPD4-220ENST00000491319 EML5Q05BV3 1969 aa16.91■□□□□ 0.3
SMPD4-220ENST00000491319 CACNA1AO00555 2505 aa16.9■□□□□ 0.3
SMPD4-220ENST00000491319 SPECC1L-ADORA2AF8WAN1 911 aa16.9■□□□□ 0.3
SMPD4-220ENST00000491319 SPTLC2O15270 562 aa16.9■□□□□ 0.3
SMPD4-220ENST00000491319 HCRTO43612 131 aa16.9■□□□□ 0.3
SMPD4-220ENST00000491319 KRT19P08727 400 aa16.9■□□□□ 0.3
SMPD4-220ENST00000491319 HMGA1P17096 107 aaKnown RBP16.9■□□□□ 0.3
SMPD4-220ENST00000491319 CTHP32929 405 aa16.9■□□□□ 0.3
SMPD4-220ENST00000491319 MLLT6P55198 1093 aaPredicted RBP16.9■□□□□ 0.3
SMPD4-220ENST00000491319 TNK2Q07912 1038 aa16.9■□□□□ 0.3
SMPD4-220ENST00000491319 E2F4Q16254 413 aa16.9■□□□□ 0.3
SMPD4-220ENST00000491319 ARHGAP29Q52LW3 1261 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms