RNA–Protein interactions for RNA: ENST00000489111.1

USP11-211, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 516 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-211ENST00000489111 FAM163BP0C2L3 166 aa10.64□□□□□ -0.71
USP11-211ENST00000489111 UNGP13051 313 aaPredicted RBP10.64□□□□□ -0.71
USP11-211ENST00000489111 EN2P19622 333 aaPredicted RBP10.64□□□□□ -0.71
USP11-211ENST00000489111 OR1G1P47890 313 aa10.64□□□□□ -0.71
USP11-211ENST00000489111 AARSP49588 968 aaKnown RBP eCLIP10.64□□□□□ -0.71
USP11-211ENST00000489111 NOMO3P69849 1222 aa10.64□□□□□ -0.71
USP11-211ENST00000489111 C1QBPQ07021 282 aaKnown RBP10.64□□□□□ -0.71
USP11-211ENST00000489111 DSC1Q08554 894 aa10.64□□□□□ -0.71
USP11-211ENST00000489111 GOLGA7BQ2TAP0 167 aa10.64□□□□□ -0.71
USP11-211ENST00000489111 PAN2Q504Q3 1202 aaKnown RBP10.64□□□□□ -0.71
USP11-211ENST00000489111 WSCD1Q658N2 575 aa10.64□□□□□ -0.71
USP11-211ENST00000489111 DENND1BQ6P3S1 775 aa10.64□□□□□ -0.71
USP11-211ENST00000489111 DCLRE1AQ6PJP8 1040 aa10.64□□□□□ -0.71
USP11-211ENST00000489111 LIMS2Q7Z4I7 341 aa10.64□□□□□ -0.71
USP11-211ENST00000489111 ACOT1Q86TX2 421 aa10.64□□□□□ -0.71
USP11-211ENST00000489111 RHOT2Q8IXI1 618 aa10.64□□□□□ -0.71
USP11-211ENST00000489111 LRRC43Q8N309 656 aa10.64□□□□□ -0.71
USP11-211ENST00000489111 C1orf131Q8NDD1 294 aaKnown RBP10.64□□□□□ -0.71
USP11-211ENST00000489111 C3orf58Q8NDZ4 430 aa10.64□□□□□ -0.71
USP11-211ENST00000489111 HASPINQ8TF76 798 aa10.64□□□□□ -0.71
USP11-211ENST00000489111 KBTBD7Q8WVZ9 684 aa10.64□□□□□ -0.71
USP11-211ENST00000489111 RABGGTAQ92696 567 aa10.64□□□□□ -0.71
USP11-211ENST00000489111 TRIM43Q96BQ3 446 aaPredicted RBP10.64□□□□□ -0.71
USP11-211ENST00000489111 CALR3Q96L12 384 aaKnown RBP10.64□□□□□ -0.71
USP11-211ENST00000489111 PAAF1Q9BRP4 392 aa10.64□□□□□ -0.71
USP11-211ENST00000489111 ZNF518BQ9C0D4 1074 aa10.64□□□□□ -0.71
USP11-211ENST00000489111 SYNCQ9H7C4 482 aa10.64□□□□□ -0.71
USP11-211ENST00000489111 HESX1Q9UBX0 185 aa10.64□□□□□ -0.71
USP11-211ENST00000489111 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.64□□□□□ -0.71
USP11-211ENST00000489111 CAPN6Q9Y6Q1 641 aa10.64□□□□□ -0.71
USP11-211ENST00000489111 ABHD14A-ACY1A0A1B0GW23 586 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 ATMINO43313 823 aaPredicted RBP10.63□□□□□ -0.71
USP11-211ENST00000489111 TRAPPC3O43617 180 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 MICAL2O94851 1124 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 KIF4AO95239 1232 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 CFHP08603 1231 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 PDGFRBP09619 1106 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 CSF2RAP15509 400 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 PCSK1P29120 753 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 LHX1P48742 406 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 GATMP50440 423 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 CNGA2Q16280 664 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 MFSD5Q6N075 450 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 MMS22LQ6ZRQ5 1243 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 MON1BQ7L1V2 547 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 ZNF280BQ86YH2 543 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 PHF13Q86YI8 300 aaPredicted RBP10.63□□□□□ -0.71
USP11-211ENST00000489111 MCOLN2Q8IZK6 566 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 SYCE1Q8N0S2 351 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 SPATA18Q8TC71 538 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 IPO4Q8TEX9 1081 aaKnown RBP10.63□□□□□ -0.71
USP11-211ENST00000489111 ARHGEF26Q96DR7 871 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 CASD1Q96PB1 797 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 ZSWIM1Q9BR11 485 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 C11orf70Q9BRQ4 267 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 LHX5Q9H2C1 402 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 FAM49BQ9NUQ9 324 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 ADAM22Q9P0K1 906 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 CNOT8Q9UFF9 292 aaKnown RBP10.63□□□□□ -0.71
USP11-211ENST00000489111 STXBP5LQ9Y2K9 1186 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 PRG3Q9Y2Y8 225 aaPredicted RBP10.63□□□□□ -0.71
USP11-211ENST00000489111 SCINQ9Y6U3 715 aa10.63□□□□□ -0.71
USP11-211ENST00000489111 TMEM189-UBE2V1I3L0A0 370 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 I3L4J1 428 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 PALMO75781 387 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 URI1O94763 535 aaPredicted RBP10.62□□□□□ -0.71
USP11-211ENST00000489111 DDHD2O94830 711 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 UPP2O95045 317 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 CYP1A2P05177 515 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 MMP8P22894 467 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 CDH5P33151 784 aaPredicted RBP10.62□□□□□ -0.71
USP11-211ENST00000489111 BRCC3P46736 316 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 SLC8A3P57103 927 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 PSMC1P62191 440 aaKnown RBP10.62□□□□□ -0.71
USP11-211ENST00000489111 PPIGQ13427 754 aaKnown RBP eCLIP10.62□□□□□ -0.71
USP11-211ENST00000489111 TIGD5Q53EQ6 642 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 ARHGAP17Q68EM7 881 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 LCLAT1Q6UWP7 414 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 UBE2Q1Q7Z7E8 422 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 OSTM1Q86WC4 334 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 ERICH1Q86X53 443 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 COLGALT2Q8IYK4 626 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 CRYBG2Q8N1P7 616 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 B3GALNT2Q8NCR0 500 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 TPCN2Q8NHX9 752 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 SLC35G2Q8TBE7 412 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 ZNF564Q8TBZ8 553 aaPredicted RBP10.62□□□□□ -0.71
USP11-211ENST00000489111 VCPIP1Q96JH7 1222 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 SUSD3Q96L08 255 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 SYT15Q9BQS2 421 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 NUP85Q9BW27 656 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 MIS12Q9H081 205 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 DPEP3Q9H4B8 488 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 AVENQ9NQS1 362 aaPredicted RBP10.62□□□□□ -0.71
USP11-211ENST00000489111 DDX43Q9NXZ2 648 aaKnown RBP10.62□□□□□ -0.71
USP11-211ENST00000489111 UVRAGQ9P2Y5 699 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 SALL4Q9UJQ4 1053 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 TSPAN16Q9UKR8 245 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 STRIP2Q9ULQ0 834 aa10.62□□□□□ -0.71
USP11-211ENST00000489111 PCDHB8Q9UN66 801 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms