RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 CNOT1A5YKK6 2376 aaKnown RBP9.51□□□□□ -0.89
USP4-213ENST00000488520 PHLPP2Q6ZVD8 1323 aa9.51□□□□□ -0.89
USP4-213ENST00000488520 NUP210Q8TEM1 1887 aaPredicted RBP9.51□□□□□ -0.89
USP4-213ENST00000488520 NUP205Q92621 2012 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 A0A087X0B3 334 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 NPHP3-ACAD11A0A0J9YXS1 232 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 POM121CA8CG34 1229 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 K7ERI5 159 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 ADAM12O43184 909 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 KIF20AO95235 890 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 PAPLNO95428 1278 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 PLS3P13797 630 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 LIG1P18858 919 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 SCP2P22307 547 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 ARL2P36404 184 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 EFNA5P52803 228 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 ATXN1P54253 815 aaKnown RBP9.5□□□□□ -0.89
USP4-213ENST00000488520 PEX3P56589 373 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 MBTD1Q05BQ5 628 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 POU5F1BQ06416 359 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 GRIK3Q13003 919 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 STRN3Q13033 797 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 CAPSQ13938 189 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 HSP90AA2PQ14568 343 aaPredicted RBP9.5□□□□□ -0.89
USP4-213ENST00000488520 PSMD5Q16401 504 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 SKOR2Q2VWA4 1001 aaPredicted RBP9.5□□□□□ -0.89
USP4-213ENST00000488520 ARSHQ5FYA8 562 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 LIN9Q5TKA1 542 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 TPRG1Q6ZUI0 275 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 MTSS1LQ765P7 747 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 HACE1Q8IYU2 909 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 FMR1NBQ8N0W7 255 aaPredicted RBP9.5□□□□□ -0.89
USP4-213ENST00000488520 ATRIPQ8WXE1 791 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 SYAP1Q96A49 352 aaPredicted RBP9.5□□□□□ -0.89
USP4-213ENST00000488520 CCDC51Q96ER9 411 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 TTPALQ9BTX7 342 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 RUSC1Q9BVN2 902 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 GTPBP4Q9BZE4 634 aaKnown RBP9.5□□□□□ -0.89
USP4-213ENST00000488520 CXCL16Q9H2A7 254 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 GOLPH3LQ9H4A5 285 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 LTB4R2Q9NPC1 389 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 KBTBD4Q9NVX7 518 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 RMND1Q9NWS8 449 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 ZFP37Q9Y6Q3 630 aaPredicted RBP9.5□□□□□ -0.89
USP4-213ENST00000488520 CHD8Q9HCK8 2581 aa9.5□□□□□ -0.89
USP4-213ENST00000488520 MYO16Q9Y6X6 1858 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 PVALEFA0A1B0GWK0 134 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 DCDC2BA2VCK2 349 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 CDC14CA4D256 554 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 MYMKA6NI61 221 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 KIF4AO95239 1232 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 C1RP00736 705 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 GLRA2P23416 452 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 NAMPTP43490 491 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 CREMQ03060 361 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 CENPCQ03188 943 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 PRKCQQ04759 706 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 POU4F2Q12837 409 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 PSMD2Q13200 908 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 TUSC3Q13454 348 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 POSTNQ15063 836 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 PCBP1Q15365 356 aaKnown RBP eCLIP9.49□□□□□ -0.89
USP4-213ENST00000488520 ZNF528Q3MIS6 628 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 ZBTB41Q5SVQ8 909 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 SLC27A1Q6PCB7 646 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 APBB1IPQ7Z5R6 666 aaPredicted RBP9.49□□□□□ -0.89
USP4-213ENST00000488520 ELOA2Q8IYF1 753 aaPredicted RBP9.49□□□□□ -0.89
USP4-213ENST00000488520 ENGASEQ8NFI3 743 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 LNX1Q8TBB1 728 aaPredicted RBP9.49□□□□□ -0.89
USP4-213ENST00000488520 SLC7A14Q8TBB6 771 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 SMARCE1Q969G3 411 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 MCRS1Q96EZ8 462 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 REEP2Q9BRK0 252 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 DDX23Q9BUQ8 820 aaKnown RBP9.49□□□□□ -0.89
USP4-213ENST00000488520 PLA2G2FQ9BZM2 168 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 BLZF1Q9H2G9 400 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 MRPL44Q9H9J2 332 aaKnown RBP9.49□□□□□ -0.89
USP4-213ENST00000488520 GPRC5CQ9NQ84 441 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 EXOC1Q9NV70 894 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 SEL1LQ9UBV2 794 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 FBXO4Q9UKT5 387 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 USP18Q9UMW8 372 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 SMG5Q9UPR3 1016 aaKnown RBP9.49□□□□□ -0.89
USP4-213ENST00000488520 HRH3Q9Y5N1 445 aa9.49□□□□□ -0.89
USP4-213ENST00000488520 SF3B1O75533 1304 aaKnown RBP eCLIP9.49□□□□□ -0.898e-6■■■■■ 107
USP4-213ENST00000488520 XYLBO75191 536 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 RPN1P04843 607 aaKnown RBP9.48□□□□□ -0.89
USP4-213ENST00000488520 HNRNPA1P09651 372 aaKnown RBP eCLIP9.48□□□□□ -0.89
USP4-213ENST00000488520 IGFBP6P24592 240 aaPredicted RBP9.48□□□□□ -0.89
USP4-213ENST00000488520 TARSP26639 723 aaKnown RBP9.48□□□□□ -0.89
USP4-213ENST00000488520 OR1D2P34982 312 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 MATR3P43243 847 aaKnown RBP eCLIP9.48□□□□□ -0.89
USP4-213ENST00000488520 NPTX2P47972 431 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 PFKPQ01813 784 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 CUL4BQ13620 913 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 CAMK4Q16566 473 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 LPAL2Q16609 132 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 MAPK6Q16659 721 aa9.48□□□□□ -0.89
USP4-213ENST00000488520 PABPC1LQ4VXU2 614 aaKnown RBP9.48□□□□□ -0.89
USP4-213ENST00000488520 L1TD1Q5T7N2 865 aaKnown RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms