RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 ARL6IP4Q66PJ3 421 aaKnown RBP14.99□□□□□ -0.01
SQSTM1-208ENST00000485412 USP49Q70CQ1 688 aa14.99□□□□□ -0.01
SQSTM1-208ENST00000485412 LRRTM3Q86VH5 581 aa14.99□□□□□ -0.01
SQSTM1-208ENST00000485412 SYNPOQ8N3V7 929 aa14.99□□□□□ -0.01
SQSTM1-208ENST00000485412 ZSWIM2Q8NEG5 633 aa14.99□□□□□ -0.01
SQSTM1-208ENST00000485412 PSMG2Q969U7 264 aa14.99□□□□□ -0.01
SQSTM1-208ENST00000485412 ATXN3LQ9H3M9 355 aa14.99□□□□□ -0.01
SQSTM1-208ENST00000485412 IL21Q9HBE4 155 aa14.99□□□□□ -0.01
SQSTM1-208ENST00000485412 PARVGQ9HBI0 331 aa14.99□□□□□ -0.01
SQSTM1-208ENST00000485412 CHD6Q8TD26 2715 aa14.99□□□□□ -0.01
SQSTM1-208ENST00000485412 CFAP47Q6ZTR5 3102 aa14.99□□□□□ -0.01
SQSTM1-208ENST00000485412 ANAPC1Q9H1A4 1944 aa14.98□□□□□ -0.01
SQSTM1-208ENST00000485412 H3BQV1 296 aa14.98□□□□□ -0.01
SQSTM1-208ENST00000485412 TRAK2O60296 914 aa14.98□□□□□ -0.01
SQSTM1-208ENST00000485412 RPP40O75818 363 aaKnown RBP14.98□□□□□ -0.01
SQSTM1-208ENST00000485412 FGF19O95750 216 aa14.98□□□□□ -0.01
SQSTM1-208ENST00000485412 CCDC192P0DO97 292 aa14.98□□□□□ -0.01
SQSTM1-208ENST00000485412 ODC1P11926 461 aa14.98□□□□□ -0.01
SQSTM1-208ENST00000485412 CCINQ13939 588 aa14.98□□□□□ -0.01
SQSTM1-208ENST00000485412 MYBPC2Q14324 1141 aa14.98□□□□□ -0.01
SQSTM1-208ENST00000485412 TMEM132DQ14C87 1099 aa14.98□□□□□ -0.01
SQSTM1-208ENST00000485412 SLC39A12Q504Y0 691 aa14.98□□□□□ -0.01
SQSTM1-208ENST00000485412 GPR158Q5T848 1215 aa14.98□□□□□ -0.01
SQSTM1-208ENST00000485412 CACNA2D4Q7Z3S7 1137 aa14.98□□□□□ -0.01
SQSTM1-208ENST00000485412 EFCAB13Q8IY85 973 aa14.98□□□□□ -0.01
SQSTM1-208ENST00000485412 GAB3Q8WWW8 586 aa14.98□□□□□ -0.01
SQSTM1-208ENST00000485412 RAD54LQ92698 747 aa14.98□□□□□ -0.01
SQSTM1-208ENST00000485412 LOXL4Q96JB6 756 aa14.98□□□□□ -0.01
SQSTM1-208ENST00000485412 SEPT5Q99719 369 aaPredicted RBP14.98□□□□□ -0.01
SQSTM1-208ENST00000485412 OBP2AQ9NY56 170 aa14.98□□□□□ -0.01
SQSTM1-208ENST00000485412 ASB3Q9Y575 518 aa14.98□□□□□ -0.01
SQSTM1-208ENST00000485412 KIAA1549LQ6ZVL6 1849 aa14.98□□□□□ -0.01
SQSTM1-208ENST00000485412 LAMA1P25391 3075 aa14.98□□□□□ -0.01
SQSTM1-208ENST00000485412 H0YCG3 227 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 EXTL3O43909 919 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 EPN2O95208 641 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 CENPBP07199 599 aaPredicted RBP14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 ZNF806P0C7X5 589 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 UBA7P41226 1012 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 PXNP49023 591 aaPredicted RBP14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 GTF2BQ00403 316 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 PLCB2Q00722 1185 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 KCNA1Q09470 495 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 CCDC142Q17RM4 750 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 STPG1Q5TH74 334 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 WSCD1Q658N2 575 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 PKN3Q6P5Z2 889 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 CRELD2Q6UXH1 353 aaPredicted RBP14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 ITIH5Q86UX2 942 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 KCTD17Q8N5Z5 321 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 RIN3Q8TB24 985 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 BPIFB1Q8TDL5 484 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 GIPC2Q8TF65 315 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 CHFRQ96EP1 664 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 AK8Q96MA6 479 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 ZCWPW1Q9H0M4 648 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 TMLHEQ9NVH6 421 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 KCNG1Q9UIX4 513 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 SLC8A2Q9UPR5 921 aa14.97□□□□□ -0.01
SQSTM1-208ENST00000485412 XPOTO43592 962 aaKnown RBP14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 CYP11A1P05108 521 aa14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 KRT18P05783 430 aaKnown RBP14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 ADSSP30520 456 aa14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 GPR15P49685 360 aa14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 SHC2P98077 582 aa14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 PTPAQ15257 358 aa14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 ITPRIPL2Q3MIP1 535 aa14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 MGAT5BQ3V5L5 792 aa14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 ADALQ6DHV7 355 aa14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 ARMCX5Q6P1M9 558 aa14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 TMEM150AQ86TG1 271 aa14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 KBTBD6Q86V97 674 aa14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 CALML4Q96GE6 196 aa14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 EPSTI1Q96J88 318 aa14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 GCNAQ96QF7 691 aa14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 PYM1Q9BRP8 204 aaKnown RBP14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 RXFP3Q9NSD7 469 aa14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 POLR3BQ9NW08 1133 aaPredicted RBP14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 THG1LQ9NWX6 298 aaKnown RBP14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 CCL26Q9Y258 94 aa14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 KIF3AQ9Y496 699 aa14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.96□□□□□ -0.01
SQSTM1-208ENST00000485412 OTOL1A6NHN0 477 aaPredicted RBP14.95□□□□□ -0.02
SQSTM1-208ENST00000485412 CYB561D2O14569 222 aa14.95□□□□□ -0.02
SQSTM1-208ENST00000485412 ATG13O75143 517 aa14.95□□□□□ -0.02
SQSTM1-208ENST00000485412 TBCAO75347 108 aaKnown RBP14.95□□□□□ -0.02
SQSTM1-208ENST00000485412 RAP1GAPP47736 663 aa14.95□□□□□ -0.02
SQSTM1-208ENST00000485412 MCM2P49736 904 aa14.95□□□□□ -0.02
SQSTM1-208ENST00000485412 SF3A1Q15459 793 aaKnown RBP14.95□□□□□ -0.02
SQSTM1-208ENST00000485412 KYAT1Q16773 422 aa14.95□□□□□ -0.02
SQSTM1-208ENST00000485412 SDHAF4Q5VUM1 108 aa14.95□□□□□ -0.02
SQSTM1-208ENST00000485412 NAIF1Q69YI7 327 aaPredicted RBP14.95□□□□□ -0.02
SQSTM1-208ENST00000485412 DYMQ7RTS9 669 aa14.95□□□□□ -0.02
SQSTM1-208ENST00000485412 SFR1Q86XK3 245 aa14.95□□□□□ -0.02
SQSTM1-208ENST00000485412 LARP4BQ92615 738 aaKnown RBP14.95□□□□□ -0.02
SQSTM1-208ENST00000485412 SLC46A2Q9BY10 475 aa14.95□□□□□ -0.02
SQSTM1-208ENST00000485412 FGFBP2Q9BYJ0 223 aa14.95□□□□□ -0.02
SQSTM1-208ENST00000485412 TASP1Q9H6P5 420 aa14.95□□□□□ -0.02
SQSTM1-208ENST00000485412 DPP3Q9NY33 737 aa14.95□□□□□ -0.02
SQSTM1-208ENST00000485412 HELZP42694 1942 aaKnown RBP14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms