RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 ANKRD36BP1Q96IX9 119 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 TCF25Q9BQ70 676 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 CLSTN3Q9BQT9 956 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 TTPALQ9BTX7 342 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 LMAN2LQ9H0V9 348 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 MMRN2Q9H8L6 949 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 VRTNQ9H8Y1 702 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 RXFP1Q9HBX9 757 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 METTL14Q9HCE5 456 aaKnown RBP7.51□□□□□ -1.21
LIMD1-204ENST00000474665 TMEM8AQ9HCN3 771 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.51□□□□□ -1.21
LIMD1-204ENST00000474665 GDAP2Q9NXN4 497 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 L1RE1Q9UN81 338 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 POLIQ9UNA4 740 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 NUB1Q9Y5A7 615 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.51□□□□□ -1.21
LIMD1-204ENST00000474665 DOCK8Q8NF50 2099 aa7.51□□□□□ -1.21
LIMD1-204ENST00000474665 MYH10P35580 1976 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 CARNS1A5YM72 827 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 LRRC10BA6NIK2 292 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 KCNJ18B7U540 433 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 C2CD2LO14523 706 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 CYB561D2O14569 222 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 GABRDO14764 452 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 SYN3O14994 580 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 PER2O15055 1255 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 TEX28O15482 410 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 OAZ2O95190 189 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 VNN2O95498 520 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 CXCL14O95715 111 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 TYMPP19971 482 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 ASPAP45381 313 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 GLUD2P49448 558 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 MXI1P50539 228 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 CDH8P55286 799 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 KRT17Q04695 432 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 DMWDQ09019 674 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 BIRC3Q13489 604 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 KCNC3Q14003 757 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 KCNJ12Q14500 433 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 USP41Q3LFD5 358 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 VARS2Q5ST30 1063 aaKnown RBP7.5□□□□□ -1.21
LIMD1-204ENST00000474665 TCERG1LQ5VWI1 586 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 PLPP4Q5VZY2 271 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 KRT39Q6A163 491 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 LRSAM1Q6UWE0 723 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.5□□□□□ -1.21
LIMD1-204ENST00000474665 TMC7Q7Z402 723 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 LRRTM3Q86VH5 581 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 GPR65Q8IYL9 337 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 PDCL2Q8N4E4 241 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 FLCNQ8NFG4 579 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 OR10T2Q8NGX3 314 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 RIN2Q8WYP3 895 aaPredicted RBP7.5□□□□□ -1.21
LIMD1-204ENST00000474665 TMEM209Q96SK2 561 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 ARID3AQ99856 593 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 MRPL45Q9BRJ2 306 aaKnown RBP7.5□□□□□ -1.21
LIMD1-204ENST00000474665 SEMA4AQ9H3S1 761 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 MFSD1Q9H3U5 465 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 SMYD3Q9H7B4 428 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 NGRNQ9NPE2 291 aaKnown RBP7.5□□□□□ -1.21
LIMD1-204ENST00000474665 TAB2Q9NYJ8 693 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 MTRRQ9UBK8 725 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 LIMA1Q9UHB6 759 aaKnown RBP7.5□□□□□ -1.21
LIMD1-204ENST00000474665 BARX2Q9UMQ3 279 aaPredicted RBP7.5□□□□□ -1.21
LIMD1-204ENST00000474665 PCDHB8Q9UN66 801 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.5□□□□□ -1.21
LIMD1-204ENST00000474665 SNX9Q9Y5X1 595 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 MYO10Q9HD67 2058 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 C2orf16Q68DN1 1984 aa7.5□□□□□ -1.21
LIMD1-204ENST00000474665 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.49□□□□□ -1.21
LIMD1-204ENST00000474665 TRAPPC3O43617 180 aa7.49□□□□□ -1.21
LIMD1-204ENST00000474665 CLASP2O75122 1294 aaKnown RBP7.49□□□□□ -1.21
LIMD1-204ENST00000474665 PHACTR2O75167 634 aa7.49□□□□□ -1.21
LIMD1-204ENST00000474665 FGFR1OPO95684 399 aaKnown RBP7.49□□□□□ -1.21
LIMD1-204ENST00000474665 GLP2RO95838 553 aa7.49□□□□□ -1.21
LIMD1-204ENST00000474665 AFPP02771 609 aaKnown RBP7.49□□□□□ -1.21
LIMD1-204ENST00000474665 LMO2P25791 158 aa7.49□□□□□ -1.21
LIMD1-204ENST00000474665 EEF1GP26641 437 aaKnown RBP7.49□□□□□ -1.21
LIMD1-204ENST00000474665 PNPLA4P41247 253 aa7.49□□□□□ -1.21
LIMD1-204ENST00000474665 RAP1GAPP47736 663 aa7.49□□□□□ -1.21
LIMD1-204ENST00000474665 CLCN5P51795 746 aa7.49□□□□□ -1.21
LIMD1-204ENST00000474665 CDR1P51861 262 aa7.49□□□□□ -1.21
LIMD1-204ENST00000474665 NOP14P78316 857 aaKnown RBP7.49□□□□□ -1.21
LIMD1-204ENST00000474665 KCNMA1Q12791 1236 aa7.49□□□□□ -1.21
LIMD1-204ENST00000474665 ELAVL2Q12926 359 aaKnown RBP7.49□□□□□ -1.21
LIMD1-204ENST00000474665 TRPC3Q13507 836 aa7.49□□□□□ -1.21
LIMD1-204ENST00000474665 SMC1AQ14683 1233 aaKnown RBP7.49□□□□□ -1.21
LIMD1-204ENST00000474665 PSMD5Q16401 504 aa7.49□□□□□ -1.21
LIMD1-204ENST00000474665 MAN2A1Q16706 1144 aa7.49□□□□□ -1.21
LIMD1-204ENST00000474665 SGSM1Q2NKQ1 1148 aa7.49□□□□□ -1.21
LIMD1-204ENST00000474665 ZNF699Q32M78 642 aa7.49□□□□□ -1.21
LIMD1-204ENST00000474665 WDR72Q3MJ13 1102 aa7.49□□□□□ -1.21
LIMD1-204ENST00000474665 SLC8B1Q6J4K2 584 aa7.49□□□□□ -1.21
LIMD1-204ENST00000474665 PHLDB3Q6NSJ2 640 aa7.49□□□□□ -1.21
LIMD1-204ENST00000474665 LILRA6Q6PI73 481 aa7.49□□□□□ -1.21
LIMD1-204ENST00000474665 RBM23Q86U06 439 aaKnown RBP7.49□□□□□ -1.21
LIMD1-204ENST00000474665 CEP57Q86XR8 500 aa7.49□□□□□ -1.21
LIMD1-204ENST00000474665 CCDC105Q8IYK2 499 aa7.49□□□□□ -1.21
LIMD1-204ENST00000474665 UBR7Q8N806 425 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms